Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0267 ATGATGAAGCCCATTAAAATGTGTTTGTGGTGGACAACTTTATTAGCAGTTATGGCAGTTGCAGCCGCCCAATCCCTGGCTGGCTGCCCCAAGAAATGCGGAGAGGTTGAGATTCCATATCCATTTGGGGTAGGCGTTCAATCTGGTACCGATAACCAGTGTTTCTTTGAGGAGGCGTTTCATGTGGATTGTAAAAACTCCATGGTATTTCAAGGCAACGTCGAAATCTCAAACATATCCCTCGAAGGTCATATGGATATGTCCATGCCTGTTTCCAAGGTCTGTTTCAATGATACAGGGGGAGTCCTAGATAACAGTATGAGAGTGACTCTGTCAACCCCAGTTTTCACCATCTCTAGCACTAAAAACAAGTTCGTAAGCCTTGGCTGCGACTCTTACGGCTACCTGAACAGTTTCCAGAACAGTCACAGATATTCCACTGGCTGCTTGACGAGATGTAACGGAGTTCCCAACCAGCAGAGCAATGGAACTTGTTCTGGGATTGGGTGCTGCCAGGTGGATATTCCTCTGGGAATGAGGAATATCAGTATTGAAGCCTTCAGCTTCAATTTGCAAGGAAAGGCGTCCGACTTCAACAACTGTAGCTATGCTTTTGTGGCCAAGCAAGGCTGGTTTAATTTCTCTACGGCTGATCTCAGGTCCTTGCCGTTCGAGAAGGCGCTGCTGGTAGTGGATTGGGCTATTTCCAACGGCACATGTGAAAGTGAGAGGACATCACCGGACTATGCCTGCAAATCCATCAACATCGACTGCGAAGACTCGGGCTATGGATTTGGGTACCGTTGCAGATGCAAACCCGGTTTTAAAGGGAACCCTTATCTTCCCGAGGGTTGCCAAGGTCATCATTCATTAATTCCCTCCTTTTCTTTGTTTTTACTTTTTAGAGCATATATTCATGAAGATAACTGTCGTAACACTGTTGGGTCTTTTGAATGTTATTGCCCTCGCGGTTACACTGGGAATGGAACCAAGGAAGCAGGATGTCACCCACCCTGGCTCCAAAATCCACTCACAATACGTCTCATTGGTGCCAGCGTAGGATTGGCAGTTCTTTTTGTGTGTGTGACTTGGCTGTATTTGATATACCAGAAGAGGAAGCTGATGAAGCAAAAGGACAAATTCTTTCGACAAAATGGGGGCGCTATTTTGCAACAAAAGCTCTCTGTAAAACAAGGCTCCTCCCTCACATCTAAAATCTTTACTGCACAAGAATTGAGAAAGGCTACTGACAACTTCCACGACGACTTAGTTATTGGCCGCGGTGGTTTTGGTACCGTTTACAAAGGAATTCTCCCTGACAACACTGTTGTCGCAATCAAGAAATCGAGACTGGTAGATCAAAGCCAAATTGAACAGTTCATTAATGAGGTGATTATACTCTCCCAGATAAATCATAGGAACGTGGTCACACTGCTAGGTTGTTGCCTAGAAACAGAGGTTCCTTTGTTAGTTTATGAGTTTGTTAATAATGGCACCCTGTTCGAATCCATACATAACAAAAGCAAAGCCTTTGGTTTTACTTGGGAAACCCGTTTGAGGATAGCAGCAGAAGTGGCAGGAGCACTGTGAAAGGCGCTGTCATTTGATGGACCAGAAGAGGAAAGAAGCCTCGCAATGTACTTCCTATCATCCTTGAATGAGGGTCGCTTGTTTGAAGTGGTTGAAAGAGGCATGGGGAATGACGAAAACAAGCAGATGTTGAAAGAAGTGGCTGAGCTCGCAGCGAGGTGCTTGAGACTTAAAGGGGAGGAGAGACCAGGCATGAAGGAAGTGGCAATGGAGTTGGAGGGAATAAGGATGACAGGGAAACATCCATGGATCAGCAAAGACTTCAACGCAGAGGAATCACAGTCATTAATTTATCGTCAGACGTCCTTTTACGGAATCTGTTGA 1914 0.4545 MMKPIKMCLWWTTLLAVMAVAAAQSLAGCPKKCGEVEIPYPFGVGVQSGTDNQCFFEEAFHVDCKNSMVFQGNVEISNISLEGHMDMSMPVSKVCFNDTGGVLDNSMRVTLSTPVFTISSTKNKFVSLGCDSYGYLNSFQNSHRYSTGCLTRCNGVPNQQSNGTCSGIGCCQVDIPLGMRNISIEAFSFNLQGKASDFNNCSYAFVAKQGWFNFSTADLRSLPFEKALLVVDWAISNGTCESERTSPDYACKSINIDCEDSGYGFGYRCRCKPGFKGNPYLPEGCQGHHSLIPSFSLFLLFRAYIHEDNCRNTVGSFECYCPRGYTGNGTKEAGCHPPWLQNPLTIRLIGASVGLAVLFVCVTWLYLIYQKRKLMKQKDKFFRQNGGAILQQKLSVKQGSSLTSKIFTAQELRKATDNFHDDLVIGRGGFGTVYKGILPDNTVVAIKKSRLVDQSQIEQFINEVIILSQINHRNVVTLLGCCLETEVPLLVYEFVNNGTLFESIHNKSKAFGFTWETRLRIAAEVAGALXKALSFDGPEEERSLAMYFLSSLNEGRLFEVVERGMGNDENKQMLKEVAELAARCLRLKGEERPGMKEVAMELEGIRMTGKHPWISKDFNAEESQSLIYRQTSFYGIC 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0267 637 CDD EGF_CA 310 327 - -
Lele01g0267 637 Pfam Protein tyrosine and serine/threonine kinase 424 529 IPR001245 GO:0004672|GO:0006468
Lele01g0267 637 SUPERFAMILY EGF/Laminin 305 330 - -
Lele01g0267 637 Gene3D Transferase(Phosphotransferase) domain 1 396 529 - -
Lele01g0267 637 Gene3D Transferase(Phosphotransferase) domain 1 530 623 - -
Lele01g0267 637 ProSiteProfiles Protein kinase domain profile. 419 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele01g0267 637 Gene3D Laminin 301 335 - -
Lele01g0267 637 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Lele01g0267 637 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 531 608 IPR045274 GO:0007166
Lele01g0267 637 SUPERFAMILY Protein kinase-like (PK-like) 398 530 IPR011009 -
Lele01g0267 637 ProSitePatterns Protein kinases ATP-binding region signature. 425 448 IPR017441 GO:0005524
Lele01g0267 637 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Lele01g0267 637 FunFam Wall-associated receptor kinase 2 389 494 - -
Lele01g0267 637 Coils Coil 570 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0267 Lele-ChrLele01 1509776 1512162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0267 493 613 Receptor kinase-like Gene Family AT1G21230 38.525 1.51e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lele01g0267 PK_Tyr_Ser-Thr 8.7e-17 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0267 01 1509776 1512162 Lele03g0272 03 1502171 1504591 hybridization