Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0222 ATGGAGCAAAGCATCCTATCCAAATACACAGTGCATCACAGCGTTACCAAGAAGCTCGCAAGGCCCAAGGGCTCTGATTTGAGCAATCCTACCGGGGCCCGATTCGTACGGATATCCGTTACTGACCCGGATGCCACGGACTCCTCCAGCGACGAGGAAGGAGAGTTCCTTGGTCGACCTAGAGTAAAGCGGTATGTGAACCAGATTGACATCGAGACTACAGCGAGAAACGGAGCCCTCCCCAACAATGCCCGGAAGAGGGCCGCCGGGAGCTCCGCAACTTGCCGGCGGCCGGCAAAGGTTTCCACGGAGAATAACGGCAGGAAGTTCCGAGGCGTACGGCAAAGACCATGGGGGAAATGGGCGGCGGAGATTAGAGATCCAGCGAGACGAGTAAGGCTCTGGCTGGGAACGTATGATACGGCGGAGGAAGCGGCCATGGTGTACGATAATGCGGCGATTAAGCTGCGAGGTCCTGACGCTTTGACGAACTTTGTGACGCCACCGGCGAGGGAAAAGGCTGAAGAAGTGGAAGTAGAAGTGAACGAGAAGCCGGAAATGAAAGTTTCTGTGCAGTCAGAAGCATCTGGTTCGGGCTACGATTCAGGAGAGGAGTCTCGTAATCTTTCGTCTCCGACATCAGTGCTTCAGTTTAGAAGCAATTCGAGCGAGGAAGCAGAGCCGGAAAAGGCGACAGGAGCATGCGGAGCAGAGGCGGAAAGAGAAGAAACAGGGGAAGAGCCATTTGGGGAGTGCGAAGAGGAAATGAGTCGAAGGAGGTTGTGGGAGGAGGAGGAGTGTTGGAGGACAGAGATGCCGGTGTGGGATGATGTGTTGATGAATTTTGAAACACCAGAGTACTCGCCGGTGATGTGGGAAGAACAGTCGCCGATGTACTGGGAAACGACTACGAGAGTGATGGCGGAGGAGATTGGGAGCGTGGGGGAGACAGATTGGGAGAGAATGTACTCGCCATCAAGGATGTGCCAGGTGGACGATTTCTTTCAGGACATATTGTTAGGGTCAGATCCTCTGGTGGCGCTCTGA 1047 0.5463 MEQSILSKYTVHHSVTKKLARPKGSDLSNPTGARFVRISVTDPDATDSSSDEEGEFLGRPRVKRYVNQIDIETTARNGALPNNARKRAAGSSATCRRPAKVSTENNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFVTPPAREKAEEVEVEVNEKPEMKVSVQSEASGSGYDSGEESRNLSSPTSVLQFRSNSSEEAEPEKATGACGAEAEREETGEEPFGECEEEMSRRRLWEEEECWRTEMPVWDDVLMNFETPEYSPVMWEEQSPMYWETTTRVMAEEIGSVGETDWERMYSPSRMCQVDDFFQDILLGSDPLVAL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0222 348 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Lele01g0222 348 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Lele01g0222 348 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Lele01g0222 348 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Lele01g0222 348 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Lele01g0222 348 CDD AP2 109 165 IPR001471 GO:0003700|GO:0006355
Lele01g0222 348 MobiDBLite consensus disorder prediction 171 187 - -
Lele01g0222 348 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Lele01g0222 348 MobiDBLite consensus disorder prediction 15 59 - -
Lele01g0222 348 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 260 - -
Lele01g0222 348 MobiDBLite consensus disorder prediction 76 105 - -
Lele01g0222 348 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Lele01g0222 348 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Lele01g0222 348 MobiDBLite consensus disorder prediction 169 256 - -
Lele01g0222 348 MobiDBLite consensus disorder prediction 189 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0222 Lele-ChrLele01 1269962 1271008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0222 8 225 AP2-EREBP Transcription Factor Family AT4G27950 52.212 7.08e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele01g0222 AP2 6.7e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0222 01 1269962 1271008 Lele01g0222 01 1269962 1271008 ECH
Lele01g0222 01 1269962 1271008 Lele03g0229 03 1245446 1247984 hybridization
Lele01g0222 01 1269962 1271008 Lele44g0178 44 1105169 1106074 hybridization