Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0200 ATGGAATTTGCCAGGATCGGACCCTCCGACCCGGGTGGCTCCTCCAGGCGCTCCGATGCTCCCATCATTGCTAAACCAACCTCTTCATTACCCACCAATAGCTCACCCTCCAGCAAGAAGAAGCTCATCTTCCTCGCAATTGTCGCCCTCGTGTTAATTGCTGGCTCCACCATCTCTGCCGGCATTGTCATCGGTGGCCGGGGCCGTGGTTCCGCCCAAAGTGGGGTGGCCATCAGGGGGAAGCCCACGGAGGCAATTTCTCGGACATGCAGCAAGACCCAGTACCCCAATCTGTGTGTGAACTCTTTGCTCGAGTTCCCGGGTTCCACGACGGCATCGGAGCAAGAACTTGTCCACATTTCCTTCAACATGACCCTGCAGCACCTGAGCAAAGCTCTCTACTCCTCCACCGGGATCTCCTACGTCCAGATGGATCCGCTCGAACGGTCGGCGTACGAGGACTGCCTCGAGCTCCTGGAGGATTCCGTGGACGCTCTCGCACGCTCCCTAGCACCCGTCACCCCCTCCCCGGTCGACGGGAGCATCAAAGCAGTCGAGTCCACCGACGATGTCATGACGTGGCTGAGCGCCGCTCTCACGAATCAGGACACGTGCACGGAGGGGTTAGCGGAGACGAGGGGGTCAGTGAGGGATCGGATGGCCAATAATTTGAAGGACTTGTCGGAGCTGGTCAGCAATTGCCTGGCGATATTCGCTGGCAGCGGGAGTGACGGCGGCGATTTCTCGGGAGTGCCAATACAGAACAGGAGGAGATTGATGGGAGAGGATAATGCGGATGGGTGGGGCAAGGATAATCCGGGTAATTTCCCGAAATGGTTGAGCAGACGAGACAGGAGATTGTTGAGCCTGCCAGTATCGGAGATTCAGGCCGATATAATCGTGTCGAAGGAGGGGAATGGAACATTCAAGACGATCGCGGAGGCCATCAAGAAGGCGCCAGAGCGCAGCAGCCGCCGTTTCATTATTTACGTTACGGCGGGAAGGTATGAAGAGCAGGATTTGAAGGTGGGAAAGAAGAAAACAAATGTGATGATGATAGGGGACGGCATGGGCAAGACAATCATCAGAGGCAAAAGAAATGTAATGGATGGCCTCACCACGTTCCGCACGGCTTCCTTCGCGGCTACTGGTGCCGGTTTCATCGCCCGAGACATAACATTCGAGAACTACGCCGGTCCAAGCAAGCACCAGGCGGTGGCCCTTCGTGTAGGAGCCGACCACGCGGTGGTTCACCGCTGCGAGATCCTGGGATACCAGGACACGTGCTATGTCCACTCCAACCGTCAATTCTTCCGCGAATGTCGCATTTACGGAACAGTTGACTTTATTTTTGGAAACGCGGCGGTGGTTTTCCAAAACTGCAGTCTCTATGCTCGGAAGCCGATGGCCCAACAAAAGAACACCATCACGGCCCAAAACCGAAAAGACCCGAATCAGAACACGGGCATATCCATCCATAACTGCCTGATCCTTCCAGCCACGGACTTAGAGTCGGAAAAGGGGAGCATCTATACCTATCTTGGCCGTCCATGGAAATTATACTCGAGAACAGTGTATATGCTATCATTCATGGACGATCACATACATCCACAAGGATGGTTGGAGTGGGACGCGTCATTTGCTTTAGACACATTATACTACGGTGAGTACATGAATTATGGGCCGGGTGCGGCCATTGGAAAACGGGTCAGATGGCCAGGGTATCGGGTAATCACCACACCCGTGGAGGCACGGCGGTTCACGGTGGCAGAATTCATATCTGGTTCGTCGTGGCTGCCGTCAACGGGAGTGGCATTTTTGGCAGGGCTTTCTACTTGA 1839 0.5503 MEFARIGPSDPGGSSRRSDAPIIAKPTSSLPTNSSPSSKKKLIFLAIVALVLIAGSTISAGIVIGGRGRGSAQSGVAIRGKPTEAISRTCSKTQYPNLCVNSLLEFPGSTTASEQELVHISFNMTLQHLSKALYSSTGISYVQMDPLERSAYEDCLELLEDSVDALARSLAPVTPSPVDGSIKAVESTDDVMTWLSAALTNQDTCTEGLAETRGSVRDRMANNLKDLSELVSNCLAIFAGSGSDGGDFSGVPIQNRRRLMGEDNADGWGKDNPGNFPKWLSRRDRRLLSLPVSEIQADIIVSKEGNGTFKTIAEAIKKAPERSSRRFIIYVTAGRYEEQDLKVGKKKTNVMMIGDGMGKTIIRGKRNVMDGLTTFRTASFAATGAGFIARDITFENYAGPSKHQAVALRVGADHAVVHRCEILGYQDTCYVHSNRQFFRECRIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHNCLILPATDLESEKGSIYTYLGRPWKLYSRTVYMLSFMDDHIHPQGWLEWDASFALDTLYYGEYMNYGPGAAIGKRVRWPGYRVITTPVEARRFTVAEFISGSSWLPSTGVAFLAGLST 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0200 612 Gene3D - 292 610 IPR012334 -
Lele01g0200 612 TIGRFAM PME_inhib: pectinesterase inhibitor domain 80 238 IPR006501 GO:0004857
Lele01g0200 612 MobiDBLite consensus disorder prediction 1 37 - -
Lele01g0200 612 FunFam Pectinesterase 82 241 - -
Lele01g0200 612 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 84 238 IPR035513 -
Lele01g0200 612 FunFam Pectinesterase 292 610 - -
Lele01g0200 612 Gene3D Invertase/pectin methylesterase inhibitor family protein 82 240 IPR035513 -
Lele01g0200 612 PANTHER PECTINESTERASE 53 600 - -
Lele01g0200 612 SMART PMEI_2 81 237 IPR006501 GO:0004857
Lele01g0200 612 MobiDBLite consensus disorder prediction 21 37 - -
Lele01g0200 612 Pfam Pectinesterase 298 595 IPR000070 GO:0030599|GO:0042545
Lele01g0200 612 Pfam Plant invertase/pectin methylesterase inhibitor 85 237 IPR006501 GO:0004857
Lele01g0200 612 ProSitePatterns Pectinesterase signature 2. 443 452 IPR033131 -
Lele01g0200 612 SUPERFAMILY Pectin lyase-like 295 609 IPR011050 -
Lele01g0200 612 CDD PMEI-like_3 90 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0200 Lele-ChrLele01 1120755 1123992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0200 1 611 Carbohydrate Esterase AT5G53370 62.704 0.0 784