Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele01g0197 | ATGATTTTGATTACTGGGTATTTCATATATCCATCACTTGTGGGAGGTTTCGGTGACTGGATGGACTTGGATAACATTGAGTGTGTGTCATCCTCGGATGGTATTGATGAGGACGAGATCCCCGGTATACAACCTCTCCCCCATCATCACTCTGAGTTTTCATCCTCAAAGCCTCGCAATGGCGCCACCAATATGGGCCCCACGGCCATTACTCCGGCAACCAGCGTCCATGAGTTGCTAGAATGCCCTGTCTGTACCAATTCTATGTACCCACCAATTCATCAGTGTCACAATGGGCACACCCTGTGTTCAACATGTAAAACAAGGGTGCACAACCGATGCCCCACATGCAGACAAGAGCTTGGGGATATTAGATGTTTGGCTCTGGAGAAGGTAGCTGAATCACTTGAGTTACCATGCAAATACTATTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTCAAGCATGAGACTGTGTGCAGCTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGTTCAGTTGTTGGGGACATCCCTTTCCTCGTTGCGCATCTGAGGGACGATCATAAGGTGGACATGCACACAGGATGTACATTCAACCATCGTTACGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACTTGGATGCTCACTGTATTTCATTGTTTTGGGCAATACTTTTGCCTTCATTTTGAAGCTTTCCAGCTTGGGATGGCCCCTGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAATGAAGCTCGAAACTATAGCTATAGCCTAGAAGTTGGGGCAAACGGCAGGAAACTGATTTGGGAGGGTACTCCAAGAAGTATCCGGGATAGCCATCGTAAAGTCAGGGATAGTCATGACGGTCTGATCATCCAACGAAATATGGCCCTTTTTTTCTCTGGTGGTGACAGGAAGGAGCTTAAGCTCAGGGTTACCGGAAGAATATGGAAAGAACAACAGAATCCAGATGCTGGGGTGTGCATACCGAATCTTTGTAGCTGA | 1035 | 0.4667 | MILITGYFIYPSLVGGFGDWMDLDNIECVSSSDGIDEDEIPGIQPLPHHHSEFSSSKPRNGATNMGPTAITPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCSFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDAGVCIPNLCS | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele01g0197 | 344 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 188 | IPR013083 | - | |
| Lele01g0197 | 344 | CDD | RING-HC_SIAHs | 80 | 118 | - | - | |
| Lele01g0197 | 344 | CDD | Sina | 196 | 324 | - | - | |
| Lele01g0197 | 344 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 31 | 133 | - | - | |
| Lele01g0197 | 344 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 134 | 190 | - | - | |
| Lele01g0197 | 344 | MobiDBLite | consensus disorder prediction | 44 | 63 | - | - | |
| Lele01g0197 | 344 | ProSiteProfiles | Zinc finger SIAH-type profile. | 135 | 195 | IPR013010 | GO:0008270 | |
| Lele01g0197 | 344 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 189 | 323 | IPR008974 | GO:0005515 | |
| Lele01g0197 | 344 | Pfam | Seven in absentia protein family | 124 | 323 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
| Lele01g0197 | 344 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 191 | 323 | - | - | |
| Lele01g0197 | 344 | ProSiteProfiles | Zinc finger RING-type profile. | 82 | 118 | IPR001841 | - | |
| Lele01g0197 | 344 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 61 | 329 | - | - | |
| Lele01g0197 | 344 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 134 | IPR013083 | - | |
| Lele01g0197 | 344 | SUPERFAMILY | TRAF domain-like | 135 | 327 | - | - | |
| Lele01g0197 | 344 | SUPERFAMILY | RING/U-box | 71 | 124 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele01g0197 | Lele-ChrLele01 | 1103760 | 1106395 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele01g0197 | 54 | 330 | C3H Transcription Factor Family | AT2G41980 | 77.338 | 5.31e-163 | 456 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele01g0197 | 01 | 1103760 | 1106395 | Lele02g0196 | 02 | 1063588 | 1066001 | ECH | |
| Lele01g0197 | 01 | 1103760 | 1106395 | Lele01g0197 | 01 | 1103760 | 1106395 | ECH | |
| Lele01g0197 | 01 | 1103760 | 1106395 | Lele03g0203 | 03 | 1077376 | 1080006 | hybridization | |
| Lele01g0197 | 01 | 1103760 | 1106395 | Lele04g0193 | 04 | 1069240 | 1078544 | hybridization |