Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0187 ATGGCACTGTCAAGCCCACACATCCAAAGATTAGTCGTAACCATACTCCATGGCCATTCCACCTCCAATAATAGCATCCGCAGAAACAGCGTCACCAATACGAGCAGAGGCCGCTGCTGCTCCGCCATAGCCATCGACACCCCGTCGTCTCTGTCTGACGTGGCAGGCATCCGATGGGGATCCATTGCTTTGCAGGGTCTTCGCGAAGAGATGGAAGATGGCATTGTTCTTCGTCCCGATGGCCTCCATGGCTTCTCTTTTGCAGCCGTGTTTGATGGGCATGGAGGATTTTCTTCCGTCGAGTTCCTCAGGGATGAACTGTACAAGGAGTGCCTTGCAGCTTTACAAGGTGGGTTAATATTGGATAGAAAAGATTTCCAAGCCATTAAGGCGGCATTACAGGAGGCATTTGTCAATGCTGACAAAAGTTTGTTAAAACGGCTTGAAATGAATGGAGATGAAGATGAATCTGGCGCTACAGCAACTGCAATGTTCGTCGAAGATGATATGCTTCTCATTTCACATTTAGGTGACTCATCTGCGGTTCTTAGCCGGTCTGGTAGAGCAGAAGAGCTGACTAGTCCCCACCGACCATATGGGAGCAATAAAGCCTCTCTTCAAGAAATTAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGTAGAATTTGCGGAGACATTGCTGTATCTCGTGCATTTGGGGATATAAGATTCAAAAGAAAGAAGAATGAGTATGGTCCTTCAACACTGTATTATTTGTTCTGTTATAAAGGCGCTATCTTTTCTTATTTATGTGTACAGCTCAACGGAGACTTGGTCATTGCATGCCCTGATATTTATCAGGTACAGCTTGGCTCAGATGCAGAATTTATATTATTGGCATCTGATGGCTTATGGGACTACATGAGCAGCTCAGAAGCAGTTTCTTTTGTGAGGAATCAACTTCGAGAGCATGGTAATATTCAGTTAGCTTGTGAAGCTCTCGCACAAGCAGCTCTGAATCGACGCACACAGGATAACATTAGCATCATAATTGCTGATTTAAGGCGGACAGACTGGCAGAAGTTGCCACTTGAGCAGCAAAACGTGATTTATGAGGCGATGCAAGCTATAGCCACCATTGGAATAGTGTCACTTGGAATTTGGTTTTCATCGCAGATGTTATGA 1170 0.4521 MALSSPHIQRLVVTILHGHSTSNNSIRRNSVTNTSRGRCCSAIAIDTPSSLSDVAGIRWGSIALQGLREEMEDGIVLRPDGLHGFSFAAVFDGHGGFSSVEFLRDELYKECLAALQGGLILDRKDFQAIKAALQEAFVNADKSLLKRLEMNGDEDESGATATAMFVEDDMLLISHLGDSSAVLSRSGRAEELTSPHRPYGSNKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKRKKNEYGPSTLYYLFCYKGAIFSYLCVQLNGDLVIACPDIYQVQLGSDAEFILLASDGLWDYMSSSEAVSFVRNQLREHGNIQLACEALAQAALNRRTQDNISIIIADLRRTDWQKLPLEQQNVIYEAMQAIATIGIVSLGIWFSSQML 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0187 389 PANTHER PROTEIN PHOSPHATASE 2C 36 347 IPR015655 GO:0004722|GO:0006470
Lele01g0187 389 CDD PP2Cc 57 349 IPR001932 -
Lele01g0187 389 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Lele01g0187 389 ProSiteProfiles PPM-type phosphatase domain profile. 58 349 IPR001932 -
Lele01g0187 389 SMART PP2C_4 48 347 IPR001932 -
Lele01g0187 389 Gene3D - 57 356 IPR036457 -
Lele01g0187 389 FunFam Protein phosphatase 2C 57 57 356 - -
Lele01g0187 389 Pfam Protein phosphatase 2C 60 342 IPR001932 -
Lele01g0187 389 SUPERFAMILY PP2C-like 53 350 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0187 Lele-ChrLele01 1042356 1045904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0187 1 326 PP2C-type Phosphatase Gene Family AT4G27800 56.886 4.52e-128 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0187 01 1042356 1045904 Lele01g0187 01 1042356 1045904 ECH
Lele01g0187 01 1042356 1045904 Lele03g0191 03 1018202 1021756 hybridization
Lele01g0187 01 1042356 1045904 Lele04g0184 04 1025559 1029113 hybridization