Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0165 ATGCAGATCTTCGTAAAAACCTTAACAGGGAAGACCATCACCCTCGAGGTAGAGTCCAGCGATACCATTGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGTATTCCACCGGACCAGCAAAGGTTGATTTTTGCCGGGAAGCAACTGGAGGATGGCCGTACTCTTGCCGATTATAACATCCAGAAAGAGTCGACATTGCATCTTGTTTTGAGGCTTCGTGGTGGTATCATCGAGCCATCTTTGATGGCATTGGCCAGGAAATATAATCAGGACAAGATGATATGCCGCAAGTGTTATGCTCGTTTGCACCCCCGTGCTGTCAACTGCAGGAAGAAGAAATGTGGACACAGCAACCAGCTGAGGCCAAAGAAGAAGATCAAGCATGTTAGCTATGTCCTTAAAGATCACACGCAATCACTTTATAACACTTTATTAGCTCAAGTGATAAACCAGAATAGATCAGGAAAAAAGAAGAGGTAG 483 0.4431 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKHVSYVLKDHTQSLYNTLLAQVINQNRSGKKKR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0165 160 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele01g0165 160 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lele01g0165 160 Gene3D - 80 128 IPR038587 -
Lele01g0165 160 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lele01g0165 160 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lele01g0165 160 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lele01g0165 160 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lele01g0165 160 PANTHER UBIQUITIN 1 91 - -
Lele01g0165 160 SMART ubq_7 1 72 IPR000626 GO:0005515
Lele01g0165 160 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lele01g0165 160 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lele01g0165 160 SUPERFAMILY Zn-binding ribosomal proteins 76 129 IPR011332 GO:0006412
Lele01g0165 160 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lele01g0165 160 Gene3D - 1 79 - -
Lele01g0165 160 CDD Ubl_ubiquitin 1 76 - -
Lele01g0165 160 FunFam ubiquitin-60S ribosomal protein L40 79 128 - -
Lele01g0165 160 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0165 Lele-ChrLele01 935679 938335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0165 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.09e-92 263