Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0154 ATGTCTCAGCAGAGCCAAAATAAGACGGTGAGTCCAAAACATGCCAAGCAACTTGGCGACACAACCTATACCAAGATCTTCGTTGGAGGACTTGCCTGCGAAACCAGAAGGGACACTCTGAAACACTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTTGTAAACGACAGAAACAGTGGAAGATCAAAGGGCTATAGCTTTGTAATCTTGCTCCCCCACTTTCTTGGCATCAAGAGCCCAGATTATGCAATAAGAGCCTGTCAGAATCCCTATCCTATGATTGATGGGAGAAGAGCCAACTGTAATCTTGCAGCTCTTGGTGCACAGAGATTCAATCCATATACAACAGTCGCAGGAAAGGAGAAATTTAGCACAACTTCTTGGCCTATAGTTTCAGTTCCAATTCAAGGAATCTCCTCTTATTACAATCAATTCATACCCCAAACTATTATAATGTCTATGGAGGACAGCAAATTCCCATTCGTTGGCCTTCGGAATTGTTCACAGTCATCGGCTTATCACAACCCATCTCAGCTTCGCCTTCAATACCCACCGCAGGTTCACCATCTAACCAATGCTACACACACACATTATCTTCTTGTTCTCTCAACTCTTCCTCGCCTTAAGTACTTTCTTGGAACAGGGGATGCTGCTTCTGCAGCAGGAATGGTCGGAACCTCCCCTGAGCAGAAATCTTGA 705 0.4454 MSQQSQNKTVSPKHAKQLGDTTYTKIFVGGLACETRRDTLKHYFEQFGEILEAVVVNDRNSGRSKGYSFVILLPHFLGIKSPDYAIRACQNPYPMIDGRRANCNLAALGAQRFNPYTTVAGKEKFSTTSWPIVSVPIQGISSYYNQFIPQTIIMSMEDSKFPFVGLRNCSQSSAYHNPSQLRLQYPPQVHHLTNATHTHYLLVLSTLPRLKYFLGTGDAASAAGMVGTSPEQKS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0154 234 SUPERFAMILY RNA-binding domain, RBD 17 106 IPR035979 GO:0003676
Lele01g0154 234 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 70 IPR000504 GO:0003723
Lele01g0154 234 CDD RRM_RBM24_RBM38_like 24 106 - -
Lele01g0154 234 Gene3D - 1 117 IPR012677 -
Lele01g0154 234 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 70 IPR000504 GO:0003723
Lele01g0154 234 PANTHER BOULE-RELATED 9 190 IPR037366 -
Lele01g0154 234 SMART rrm1_1 25 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0154 Lele-ChrLele01 892205 893528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0154 20 107 C2H2 Transcription Factor Family AT2G19380 37.500 4.17e-10 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0154 01 892205 893528 Lele02g0160 02 884442 885897 ECH
Lele01g0154 01 892205 893528 Lele01g0154 01 892205 893528 ECH
Lele01g0154 01 892205 893528 Lele03g0162 03 867813 869201 hybridization
Lele01g0154 01 892205 893528 Lele44g0270 44 1948414 1950290 hybridization