Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0153 ATGGCGGTAGCTGAGAATGCCGGAGCCATAATCGGTTCATCCAGTCAAAATTTAGATAACTGTGTAGTATCGTCGGACTCAACTGTGACAAATGAACTCGAGAAATCGAAACCCAGAACTGGGGCTACTGTAAATGGTTTAGAAACAGATGTTCAACCTGTCAACGGCGATCAGAGTCTGAATGACGTGTTCGGTCATCAGGATAGAGCTCCGTCGGTTCCTAACGGCAATTACAAGTCTCAAATCACTCAGATGCGAAATGGGTTCGAGGCAGATGGGGTTCAGAACCAGCAGATGGTGCTCAATAATAGCGGATACGGAATTAAGCAAATGTCTAACGGTGTAAGGAATGGTGAAGATGGTGGCGAGAGTTTCAAGCGTGATATGAGGGATTTGGCAGAGTTGTTGTCGAAGTTGAATCCCATGGCCGAGGAATTTGTACCACCATCACTTGCCAATAATCACGGATTCTTAGGCGGTGCTGGGTTTGGCTACCCCAACAACTTTCTACCCCACACTAATTATGGCAATGCAAATGGACATACTAACCGAAGGAGGAAGAATGGATACAATCAAGGGAAGCGAAGAGCTAATAATAAAATGGAAATGGAGAAGAGAGAAGAGATGATTAAGAAGACTGTTTATGTTTCTGACATTGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGACAGGTTGTTGATTGCCGAGTATGTGGGGATCCTAATTCCATACTTCGTTTTGCCTTCATCGAGTTCACGGATGAAGAAGGTGCGAGGGCTGCTTTGAACCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATCGCACCAGTTAACCCCTCATTTTTGCCCAGGTCTGAAGATGAACGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGTTACCCAAGCAGATGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCCTGAGGCTTCTTGGAGATTACCATCACTCAACTCGAATCGCATTTGTTGAGTTCACTATGGCCGAAAGTGCAATTGCAGCTCTTAACTGCAGTGGAGTGATTTTGGGTTCGCTACCTATCAGGGTAAGTCCATCAAAGACACCTGTGCAGTCTCGCGCACCCCATAGAAGCAAATATTGTCTAAGGTATCTGTGGCCTTTAGTCTATACTTTTGTCCTTGAGTCTTGGTGTATGGTGTTCGTTTCCCCTAGGGGTTATGGATTACTTGTTTAG 1287 0.4507 MAVAENAGAIIGSSSQNLDNCVVSSDSTVTNELEKSKPRTGATVNGLETDVQPVNGDQSLNDVFGHQDRAPSVPNGNYKSQITQMRNGFEADGVQNQQMVLNNSGYGIKQMSNGVRNGEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLANNHGFLGGAGFGYPNNFLPHTNYGNANGHTNRRRKNGYNQGKRRANNKMEMEKREEMIKKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVILGSLPIRVSPSKTPVQSRAPHRSKYCLRYLWPLVYTFVLESWCMVFVSPRGYGLLV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0153 428 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 134 391 - -
Lele01g0153 428 Gene3D - 173 289 IPR012677 -
Lele01g0153 428 Gene3D - 295 395 IPR012677 -
Lele01g0153 428 SUPERFAMILY RNA-binding domain, RBD 298 394 IPR035979 GO:0003676
Lele01g0153 428 FunFam Polyadenylate-binding protein-interacting protein 10 303 381 - -
Lele01g0153 428 MobiDBLite consensus disorder prediction 28 51 - -
Lele01g0153 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 385 IPR000504 GO:0003723
Lele01g0153 428 Pfam Ataxin-2 C-terminal region 136 150 IPR009818 -
Lele01g0153 428 CDD RRM1_CID8_like 210 289 IPR034823 -
Lele01g0153 428 FunFam Polyadenylate-binding protein-interacting protein 11 175 289 - -
Lele01g0153 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 378 IPR000504 GO:0003723
Lele01g0153 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 276 IPR000504 GO:0003723
Lele01g0153 428 MobiDBLite consensus disorder prediction 175 199 - -
Lele01g0153 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 287 IPR000504 GO:0003723
Lele01g0153 428 SMART rrm1_1 310 381 IPR000504 GO:0003723
Lele01g0153 428 SMART rrm1_1 213 283 IPR000504 GO:0003723
Lele01g0153 428 SUPERFAMILY RNA-binding domain, RBD 187 288 IPR035979 GO:0003676
Lele01g0153 428 CDD RRM2_CID8_like 305 386 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0153 Lele-ChrLele01 885968 889928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0153 214 380 Eukaryotic Initiation Factors Gene Family AT1G34140 25.146 8.65e-11 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0153 01 885968 889928 Lele02g0159 02 879327 883381 ECH
Lele01g0153 01 885968 889928 Lele01g0153 01 885968 889928 ECH
Lele01g0153 01 885968 889928 Lele03g0161 03 860787 866119 hybridization
Lele01g0153 01 885968 889928 Lele04g0156 04 882448 886146 hybridization