Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0138 ATGAAAACAATTTTGTCTTCTGAAACAATGGACATCCCGGATGGGGTGTCCATCAAAGTGAAGGCTAAGATCATCGAGGTAGAGGGACCTCGCGGTAAGCTTGTCCGTGATTTTAAGCACTTGAACATCGATTTTCAACTTATCACCGACGAGGAGGGCAAGAGAAAGCTTAAGGTCGATGCCTGGTTTGGATCCAGGAAAACTTCTGCTGCCATTCGCACGGCCCTTAGTCATGTAGAAAATCTCATCACCGGCGTCACAAAGGGTTACCGCTATAAGATGAGGTTTGTCTATGCGCATTTTCCTATTAACGCCAGCATTACCAACAGCAACAGGTCCATTGAGATCCGAAACTTCCTTGGCGAGAAAAAGGTGAGGAAAGTGGATATGCTTGAGGGAGTTTCAATTGTACGATCTGAAAAGGTTAAGGATGAGTTGGTATTGGATGGAAATGATATTGAGCTGGTTTCTCGTTCTGCCGCTCTCATCAATCAGAAATGCCATGTTAAGAACAAAGATATTCGGAAGTTTCTTGATGGTATTTACGTTAGCGAGAAGGGAACAATCCTTGAAGAATAG 579 0.4387 MKTILSSETMDIPDGVSIKVKAKIIEVEGPRGKLVRDFKHLNIDFQLITDEEGKRKLKVDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNRSIEIRNFLGEKKVRKVDMLEGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTILEE 192
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0138 192 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 FunFam 60S ribosomal protein L9 1 89 - -
Lele01g0138 192 FunFam 60S ribosomal protein L9 90 192 - -
Lele01g0138 192 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
Lele01g0138 192 Gene3D - 90 192 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 190 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Lele01g0138 192 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele01g0138 Lele-ChrLele01 812740 813890 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0138 1 192 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 83.938 8.14e-119 333
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0138 01 812740 813890 Lele26g1048 26 6780426 6784664 CCT
Lele01g0138 01 812740 813890 Lele28g1039 28 6734758 6741752 CCT
Lele01g0138 01 812740 813890 Lele01g0138 01 812740 813890 ECH
Lele01g0138 01 812740 813890 Lele03g0145 03 776023 777823 hybridization
Lele01g0138 01 812740 813890 Lele04g0136 04 782376 784210 hybridization