Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0121 ATGGAAACATCGGGTGCTAGTTCAGAACAATACGCCATTTCTTCTTCCTCCTCATCTTCCACTGTTGGTGTAAATGATAGTAACAGTAATAGCAGTGCCGTTACTGAACCCTGGTACGGGATGAGGTTAGCCCCTGTCACCCCTCTCCGTTCTCCAGTCTCTTTTCTGCTAAATTACGCGGGCATTCTCCGCTCAAGTTCGGCAGCTCGCGATTCAGAGGCCGTGATAGTCAACAGCGGAGTTACCACTTCGGAAATACGCTCTCAGCTTTCTGAGTCTGGCGCCGCGTGCAGTGGCAGTGCTGGTGAAGTTTCAATACGGATCATCGGGGCTGCAGAACAAGAACAGGGTGTTGCGTTAGGTTCTTTTTCTACTCCCTCTCTGAATCAGCTTGGACAAGTCGATCATGATGATTTGATGGGAAATAGAGGAGGGATGCCCGCATTGGATGGCTACGCGGAGGGTCGCGGTGAAAGAGTCCCCCTAGTGTCTTCGACCACACCGGCCATTAGTGGACATGTGGATGAAAATGTCGGGAATGCCTCGGAAAGCAACAATGGGGATTCATCCTCTTACCAGAGGTATGATATTCAGCAGGCTGCTAAGTGGATTGAGCAGATTCTTCCTTTCTCACTGTTGCTATTGGTTGTTTTCATTCGTCAGCATTTGCAAGGTTTTTTTGTCACGATTTGGATTTCAGCTGTGGTGTTCAAATCAAATGAAATTGTTAAGAGGCAGACAGCGCTAAAGGGAGATAGGAAAGTCTCAATTCTTGTCAGTATTTCTCTCGCCTTCATGCTTCATGTGATGTGCATTTACTGGTGGTATCGAAGTGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCACCTCCCTTCTGTCATGCTATATTCATCATCTTGGTTAATGATACACTGGTGCGGCAAGTAGCAATGGCTTTCAAGTGTTTGCTGCTTATATATTACAAAAATGGAAGAGGTCATAACTTCCGCCGGCAGGGCCAAATGTTAACTCTGGTTGAGTACTCATTGCTATTGTATCGTGCCTTGTTGCCTACATCAGTTTGGTACCGTTTTTTCTTAAACAAGGATTATGGGAGTCTTTTTTCATCACTGACAACAGGATTGTATTTAACTTTCAAGCTAACATCTGTTATTGAGAAGGTTCAATGCTTCTGTTTTGCATTAAAAGCGTTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACAATGGAACAGGTAAGTGCTGCTGGCGACCTATGTGCTATATGCCAAGAGAAGATGCATGCTCCAGTTTTGTTGCGCTGCAAACACATTTTCTGTGAGGAATGCGTATCAGAATGGTTTGAGGGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCTGCTGGCCTGCGGACCTTTGGGGATGGATCGACAAGTCTAATTTTCCAGCTGTTTTAG 1461 0.4531 METSGASSEQYAISSSSSSSTVGVNDSNSNSSAVTEPWYGMRLAPVTPLRSPVSFLLNYAGILRSSSAARDSEAVIVNSGVTTSEIRSQLSESGAACSGSAGEVSIRIIGAAEQEQGVALGSFSTPSLNQLGQVDHDDLMGNRGGMPALDGYAEGRGERVPLVSSTTPAISGHVDENVGNASESNNGDSSSYQRYDIQQAAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVVFKSNEIVKRQTALKGDRKVSILVSISLAFMLHVMCIYWWYRSDDLLYPLIMVPPKSAPPFCHAIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYSLLLYRALLPTSVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQCFCFALKALSRKEVHYGIYATMEQVSAAGDLCAICQEKMHAPVLLRCKHIFCEECVSEWFEGERTCPLCRALVKPAGLRTFGDGSTSLIFQLF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0121 486 SUPERFAMILY RING/U-box 415 468 - -
Lele01g0121 486 MobiDBLite consensus disorder prediction 1 33 - -
Lele01g0121 486 MobiDBLite consensus disorder prediction 169 190 - -
Lele01g0121 486 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 26 486 IPR044235 GO:0061630|GO:1904294
Lele01g0121 486 SMART ring_2 425 462 IPR001841 -
Lele01g0121 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 470 IPR013083 -
Lele01g0121 486 ProSiteProfiles Zinc finger RING-type profile. 425 463 IPR001841 -
Lele01g0121 486 CDD RING-HC_RNFT1_like 424 463 - -
Lele01g0121 486 ProSitePatterns Zinc finger RING-type signature. 440 449 IPR017907 -
Lele01g0121 486 Pfam Zinc finger, C3HC4 type (RING finger) 423 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0121 Lele-ChrLele01 706913 711944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0121 49 486 C3H Transcription Factor Family AT5G01960 62.273 0.0 551
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0121 01 706913 711944 Lele03g0121 03 680035 685017 hybridization
Lele01g0121 01 706913 711944 Lele44g0277 44 2002194 2005818 hybridization