Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0119 ATGGGGAGGACCTTTAAAGTAGTCGACATTTCTTGCTTTGCTTGGAAATTTTCATTTGGATCTGGGAATATTAACGTTTTTCCGGGATACCCAGAGTCTTTTGGCATTTTTGTTGATGGAAGACCTGCAAGGTGTTATCGTCAAATAAAAAACAAGCCTTACCCTAAATCACGCTTTTGTCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGGGTTGACGAGTTTCCTTTCTGCGTCCATCTTGTTAGCTGGGAGAAGGAAAATGTTTCAAGTGAAGCACTGGAAGCTGCTAGGATTGCTTGCAACAAATATATGGCCAAATTTGCTGGAAAGGATGCCTTCCATTTGAGAGTTAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCCGGAGCTGATAGGCTCCAGACAGGGATGAGAGGTGCATTTGGAAAGCCACAAGGTACCTGTGCTAGAGTTGCCATTGGTCAGGTCCTTCTTTCTGTCCGTTGCAAGGATAGCAACAGCCATCATGCCCAGGAAGCTCTCCGTCGTGCGAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGTAGGAAGTGGGGTTTCACCAAGTTTAACCGAACAGACTACTTGAAGTTTAAGTCAGAGAGCAGGATCATGCCAGATGGTGTTAATGCAAAGCTTCTTGGATGCCATGGACCTTTGGCTAACCGTCAACCTGGAAGGGCTTTCCTGTCCTCTGCAACTGCTTAG 777 0.4466 MGRTFKVVDISCFAWKFSFGSGNINVFPGYPESFGIFVDGRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSESRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0119 258 CDD Ribosomal_L16_L10e 78 203 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele01g0119 258 FunFam 60S ribosomal protein L10 38 243 - -
Lele01g0119 258 Pfam Ribosomal protein L16p/L10e 49 203 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele01g0119 258 ProSitePatterns Ribosomal protein L10e signature. 145 166 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele01g0119 258 SUPERFAMILY Ribosomal protein L16p/L10e 41 210 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele01g0119 258 PANTHER 60S RIBOSOMAL PROTEIN L10 41 250 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele01g0119 258 Gene3D Ribosomal protein L10e/L16 39 254 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele01g0119 258 TIGRFAM uL16_euk_arch: ribosomal protein uL16 41 211 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0119 Lele-ChrLele01 699445 701384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0119 41 257 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.636 7.74e-142 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0119 01 699445 701384 Lele03g0119 03 669218 671400 hybridization
Lele01g0119 01 699445 701384 Lele04g0118 04 685500 686710 hybridization