Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0113 ATGATGAATATCATGTCTTGGCTACGTCCTGAAATTATGACTTCAGAGGTTAGATACGGGGCTGGTAGCCATATGAAAGCAGAAGTTGATCACAGACACAGATACTCACTGCCCGCAGAGACATGCGAGATCGGACCAATGCTTCAAGAAGACATACCAGACCTACTACCTGAATTGAGACCATATCAAAGGCGTGCAGCTTTTTGGATGGTAGAAAGAGAGAGAAAAAGAGCTGGAGGTCAGGGGGAAAGAGAGAGAAGTCATTTTTATTCTCCTTTATGTGTGCCTGTGGATTTTATTGACACGTGCTTTAAAATGTTCTTTAATCCATTCAGAGACTCATGCACCTCGTGTGGTTTTGGAGGCATTCTTGCTGATGAGATGGGGTTGGGAAAAACTGTTGAACTTCTTGCTTGCATCTTTACTCATCAGGGATCAGCATCTGAAAATGACATTCTTATTGACCCAAAGTTGCAAGTTAATGAGGATCGTAAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCTCCTGAAGGAAAATCACTGAAATCAAAACAGGGGTCTGAAAGTGAGAAATTTAAAACCACCTTAGCTGTGAAAGGCACGGTTGAAGAGAGCATATATAAGCTGAACAGAAGAAGGGCTGGCCATTCAGTCATCAGTGGTAACACAAAAAATCAAGACCAGCCCATGTTGACCCTGAAAGACGTCGAAACCTTGTTAGTCACAGCTCCATTAACGAAACCAGAAAGTGATGAAAATCCCTCTGCAAGTTTAAGGCACTTGCCGCCAGCAATGGCCGCTGCTATTGCTGCTGAGAGGAGACTCGATGAACAAAGGCCATGA 861 0.4344 MMNIMSWLRPEIMTSEVRYGAGSHMKAEVDHRHRYSLPAETCEIGPMLQEDIPDLLPELRPYQRRAAFWMVERERKRAGGQGERERSHFYSPLCVPVDFIDTCFKMFFNPFRDSCTSCGFGGILADEMGLGKTVELLACIFTHQGSASENDILIDPKLQVNEDRKCDICDAWQHADCVGYSPEGKSLKSKQGSESEKFKTTLAVKGTVEESIYKLNRRRAGHSVISGNTKNQDQPMLTLKDVETLLVTAPLTKPESDENPSASLRHLPPAMAAAIAAERRLDEQRP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0113 286 SUPERFAMILY FYVE/PHD zinc finger 165 183 IPR011011 -
Lele01g0113 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 202 284 - -
Lele01g0113 286 MobiDBLite consensus disorder prediction 251 270 - -
Lele01g0113 286 Pfam SNF2-related domain 62 250 IPR000330 GO:0005524|GO:0140658
Lele01g0113 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 143 IPR027417 -
Lele01g0113 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 203 IPR013083 -
Lele01g0113 286 Gene3D - 102 161 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0113 Lele-ChrLele01 673155 675707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0113 55 153 RAD5 or RAD16-like Gene Family AT5G22750 32.710 2.85e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele01g0113 SNF2_N 3.9e-11 CL0023