LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g0067	ATGCTGAACGAGGCACCTTCATTGGTCTCCCATCCTTTTAAACCTCCAATGGCCGACCTTTCTTCCTCACCCCCTCACGCGCTTCACCCTCCCCAAGAAACCAAACCCACCGCCGTTGCCACCGGCACTCCCTGCCCAACATCTTCTAATAACACCAAACCTGACTCTGCTCTCAAATGTAAAGGCAAGGGCGGTCCCGACAACAACAAATTTAGGTACCGTGGCGTGAGGCAACGAAGCTGGGGCAAATGGGTCGCTGAGATACGAGAGCCTAGCAAGCGAACCCGAAAGTGGCTCGGCACCTTCACCACCGCCGAGGACGCCGCTAGAGCCTACGACCGCGCCGCTATCATCCTCTACGGCTCTAGGGCTCATCTCAATTTACGACCCTTCGCTGCCTCTTCCCACTCTTCCTCCTATCGGACCTCTACTCCTTCCTTTTCTCAAACCCTTCGTCCCTTGCTTCCCCACCCTTCTGGCCTTAGCTTCGCCTTTTCTTCTGCCGCCACATCGGGTTTCTTGCCCTACGGGGTTTATCCCAATAATACTAATACTGATTATATCCCGCAAATGATGTGCCCGTTGAATAATAATATGGTGCGACTTCCACAGAAACCGTATCAGTCCCCAGAATCTGACGGAAATATTGTCGACAACTCCAACACAGCAACCTCGTACCAGGATCAGCTGCAGCAGCAGCCTCAGTTGAATCTACGGCAGCATCAGAATTGCATGCACGATGATATTAGTTATTTGGGGAGTTCGGTTGGGTCAAGTTTGTGTTCCTCGCAGACACAGACTGTGGTTACACCTGCGGATCCGTGGTCGTTGACGAATGAGGAAGAATACCCACCAAGTCTATGGGACTACTACAACGATCCTTTCCTCTTTGATTTTTAA	900	0.5178	MLNEAPSLVSHPFKPPMADLSSSPPHALHPPQETKPTAVATGTPCPTSSNNTKPDSALKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPSKRTRKWLGTFTTAEDAARAYDRAAIILYGSRAHLNLRPFAASSHSSSYRTSTPSFSQTLRPLLPHPSGLSFAFSSAATSGFLPYGVYPNNTNTDYIPQMMCPLNNNMVRLPQKPYQSPESDGNIVDNSNTATSYQDQLQQQPQLNLRQHQNCMHDDISYLGSSVGSSLCSSQTQTVVTPADPWSLTNEEEYPPSLWDYYNDPFLFDF	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g0067	299	Pfam	AP2 domain	72	120	IPR001471	GO:0003700\|GO:0006355
	Lele01g0067	299	MobiDBLite	consensus disorder prediction	36	56	-	-
	Lele01g0067	299	MobiDBLite	consensus disorder prediction	1	72	-	-
	Lele01g0067	299	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	46	248	-	-
	Lele01g0067	299	CDD	AP2	72	129	IPR001471	GO:0003700\|GO:0006355
	Lele01g0067	299	ProSiteProfiles	AP2/ERF domain profile.	72	129	IPR001471	GO:0003700\|GO:0006355
	Lele01g0067	299	Gene3D	AP2/ERF domain	71	129	IPR036955	GO:0003700\|GO:0006355
	Lele01g0067	299	SMART	rav1_2	72	135	IPR001471	GO:0003700\|GO:0006355
	Lele01g0067	299	PRINTS	Ethylene responsive element binding protein signature	95	111	IPR001471	GO:0003700\|GO:0006355
	Lele01g0067	299	PRINTS	Ethylene responsive element binding protein signature	73	84	IPR001471	GO:0003700\|GO:0006355
	Lele01g0067	299	FunFam	Ethylene-responsive transcription factor 2	72	130	-	-
	Lele01g0067	299	SUPERFAMILY	DNA-binding domain	72	128	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g0067	Lele-ChrLele01	435286	436185	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g0067	59	299	AP2-EREBP Transcription Factor Family	AT2G40220	41.781	2.05e-41	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele01g0067		AP2	5.4e-12	CL0081