Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0059 ATGTGGTGGGTTGATGAAGGTGATCAAGAGGGAAAGAGAAGCAAAAATGGGGTGCAGAACTTGGATGGATATGCGACCTTCCAATTGATTTTTGATCAAAAACAGCGTCGAAGAAAAGTCACGCTTTCCTTCCTCCTTCCTCCTCCTCGGACTGAGTGGGAGCACCACATAAAAAGGGCAACCCACTCCTCTTCGTTCCTCAACTTCTCCAATCGAGGCCTTCTCGATTTTCCTCTCCACGGCATTCACCCCACTCACTCATATACTGCTCGACACTGTTCAATTTTCAAAGAACCTGGGATGTGCGGTGGTTCAAAAAGTAAGCTCTCTCCCTCGAACGCCATGGAAAGTGAATCCCAAAAGCGGAACTTCTGCGACTCTTCGGTTTTGCTTGAACTCTCAGCATCCGATGATCTTGAAGCTTTCAGAAAAGAAGTGGAAGACAAGGGCTGCGACATCAACGTGGCAAGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGGGTGGGAGAAGAGGACGGCCCTCATGATTGCGTCTTTATTTGGAAGCACTAGAGTGTTGAAGTATATAATTGAGTCTGGCATAGTTGATGTGAACAAAACCTGTGGTTCTGATAGTGCCACGGCTCTCCATTGTGCTGTTGTTGGGGGCTCTCACTCTTCACTCGAGATTGTTCAGCTTTTGCTTGATGTTGGTGCCGACGCTGATTGCGTCGATGCTAGAGGAAATAAGCCTGCCAACCTGCTTGCCCCTGCCTTCAATTCCTTCTCCAACGCAAGAAGAAAGGCCATAGAGTTGTTGCTCAGAGGTTTACAAGGAGATCAAATTATCAATCAGGAGATGGGGCAACAAAAAGTTGCAGTGCCTACTTTGTCCTCAAAAGAAGGAACTGAGAAAAAAGAATTTTCTGTTGATGTATCGTTGCCTGACATAAACAGTGGTATATATGGAACGGACGAGTTTAGAATGTACAGTTTCAAGGTGAAGCCGTGTTCAAGGGCTTACTCACATGACTGGACCGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGACCCATGTAAGTACCCTTACAGCTGTGTGCCCTGCCCTGAGTTTCGCAAGGGTACATGCCAGAAGGGAGATGCTTGTGAGTACGCACACGGTGTTTTCGAGTCCTGGCTCCATCCTGCTCAATACAGAACAAAACTTTGCAAGGATGAGATTGGATGCACTAGGAAAGTTTGTTTCTTTGCTCACAAGCCTGAAGAGTTGCGCCCTGTGTATGCTTCTACTGGCTCTGCCTTGCCTTCTCCAAAGTCATTGGCCAGTGTTCTTGATATGACACCAATGAGTCCATTGGCTCTTAGTTCTTCATCTTTGCCGATGCCAACTGTTTCAACTCCGCCTATGTCTCCCATTTCAGCTTCATCACCTCCTAAGAGTGGAGGTTTGTGGCAGAACAAAAGAAACCTCACACCACAATCATTGCAGCTCCCCGGGAGCCGACTGAAGGCTACCCTAAGTGCTAGGGATTATGGTCTGGATATGGAACTGCTTGGACTAGAAGGTCCTGCAAAGCAGCATCAGCAGCAATTGATAGAAGAATTGGCTCGAATCTCCTCCCCATCCCTACGGAACAAAGACTTCAGTAGGATTGGTGATTTGAACCCAACAAACCTTGATGACCTTCTAGGATCTGTTGATCATTTTGTATCACCTCAATTACATGGCCTCTCAGCGTCTAGTCAATTGAACTCTCCAAGTGGGCTTCAAATGCGCCAAAATATGAACCCTCTTCGTGCAAGCTATCCAACCAACATGCCTTCCTCTCAAGTGAGGAAATCCTCTGCATTTGGGTTGGACTCTTCAGCTGCCGTGGCGGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTCGCGAAGAGAAGTCAGAGTTTTATTGACCGCCGTGAATCGGTGAGCCACCATCTCGGGCTTTCTTCACCTTCCCTCCATTCCTGTAGGGCGTCCTCTGCCCTTTCAGATTGGAGTTCTCCTGATGGAAAATTGGATTGGGGCATGAATGGACGTGAGATGCACGTGCTGAAGAAATCTGCTTCATTCGGGTTTAGGAATAATGGGGTGTCTGCCACCTCCATGACTCCATCAGAACACGGTGAACCAGATGTCTCATGGGTTCATTCGTTGGTTAAAGATGTGCCCTCCGAGGAGTTGTGTTGTTGA 2217 0.4781 MWWVDEGDQEGKRSKNGVQNLDGYATFQLIFDQKQRRRKVTLSFLLPPPRTEWEHHIKRATHSSSFLNFSNRGLLDFPLHGIHPTHSYTARHCSIFKEPGMCGGSKSKLSPSNAMESESQKRNFCDSSVLLELSASDDLEAFRKEVEDKGCDINVASFWYGRRIGSKKMGWEKRTALMIASLFGSTRVLKYIIESGIVDVNKTCGSDSATALHCAVVGGSHSSLEIVQLLLDVGADADCVDARGNKPANLLAPAFNSFSNARRKAIELLLRGLQGDQIINQEMGQQKVAVPTLSSKEGTEKKEFSVDVSLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPCKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRKVCFFAHKPEELRPVYASTGSALPSPKSLASVLDMTPMSPLALSSSSLPMPTVSTPPMSPISASSPPKSGGLWQNKRNLTPQSLQLPGSRLKATLSARDYGLDMELLGLEGPAKQHQQQLIEELARISSPSLRNKDFSRIGDLNPTNLDDLLGSVDHFVSPQLHGLSASSQLNSPSGLQMRQNMNPLRASYPTNMPSSQVRKSSAFGLDSSAAVAAAVMNSRSAAFAKRSQSFIDRRESVSHHLGLSSPSLHSCRASSALSDWSSPDGKLDWGMNGREMHVLKKSASFGFRNNGVSATSMTPSEHGEPDVSWVHSLVKDVPSEELCC 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0059 738 Gene3D - 363 425 - -
Lele01g0059 738 SMART ANK_2a 172 202 IPR002110 GO:0005515
Lele01g0059 738 SMART ANK_2a 207 239 IPR002110 GO:0005515
Lele01g0059 738 MobiDBLite consensus disorder prediction 457 487 - -
Lele01g0059 738 PANTHER UNKEMPT FAMILY MEMBER 132 731 IPR045234 -
Lele01g0059 738 ProSiteProfiles Ankyrin repeat region circular profile. 207 241 - -
Lele01g0059 738 ProSiteProfiles Ankyrin repeat profile. 207 242 IPR002110 GO:0005515
Lele01g0059 738 Gene3D - 103 254 IPR036770 -
Lele01g0059 738 FunFam Zinc finger CCCH domain-containing protein 66 320 388 - -
Lele01g0059 738 SMART c3hfinal6 362 388 IPR000571 GO:0046872
Lele01g0059 738 SMART c3hfinal6 397 420 IPR000571 GO:0046872
Lele01g0059 738 ProSiteProfiles Zinc finger C3H1-type profile. 362 389 IPR000571 GO:0046872
Lele01g0059 738 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 367 387 IPR000571 GO:0046872
Lele01g0059 738 SUPERFAMILY Ankyrin repeat 123 249 IPR036770 -
Lele01g0059 738 Pfam Ankyrin repeats (3 copies) 149 239 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0059 Lele-ChrLele01 369972 374701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0059 101 730 C2H2 Transcription Factor Family AT5G12850 39.481 4.29e-136 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele01g0059 Ank_2 1.2e-07 CL0465