Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0050 ATGAGAGGGCTACCTCTCCTGGTTCTCGGAGATATTGCCCACGCCTCTCCAATGGCCTCTGGCTACCGAGATCGTACGTCAGAGTTCCGATCTCTCTCTCAAACTCTGAAGAAGATTGAGGGAATCCCATTGCCCAATCAAGCTGACGATGTTCCTTCCACATCGAAACAATATACTCCCGTCTCCTATTCTAGATCTGAATTCAACAGTAAGGCCTCTCGAATCGGGTTGGGTATCCATGAAACCTCCCAGAAGATTTCGAGGCTTGCTCAATTGGCAAAGAAGTCATCAATGTTTAATGATCCCACTGTGGAAATACAGGAATTAACGGCTTTGATAAAGAATGACATCACGGCATTGAATTCAGCTCTTTCAGATTTACAAACTATTCAAAAAATGGAAATAGCAGATGGAAATTATTCGGACGATAGAATTGCTCATTCAACAACTGTTTGTGATGACTTAAAGGGCAAACTTATGGGGGCGACTAAGCAGCTTCAAAATGTGTTAACTACTAGGACAGAGAATATCAAGGCCCATGAGAATAGGAAGCATATATTTTCCAAGAAGGCGTCTAGGGACAATCCTTTCCAGCATCGACCAAAGCCAGTGACGGAGCCACCACCTTGGTCAAATTCATTAAATGCATCTGAAAGTTCACAGCAAACATCAGCATCTCTTTCAAACGAAGTTACACCGAGCAATCAGTTAAGACGGAGGCTGGCTGCTGACAACACTCCATCCCAGCAAATGGAAATGTCTATGATGCAGCAAGTTGTCCCAAGACAGGAAAGTTATAGTCAGAGTCGTGCTACTGCTCTACACAGTGTGGAATCTACTATCACAGAACTTAGCGGGATCTTCACTCATTTGGCCACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGACGACAACGTGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGCAAGATATCATCGAATAGGTGGCTTCTAATCAAGATATTTGCTATTCTGATACTTTTTCTGCTGATCTTCATATTCTTCGTGGCCTAA 1071 0.4323 MRGLPLLVLGDIAHASPMASGYRDRTSEFRSLSQTLKKIEGIPLPNQADDVPSTSKQYTPVSYSRSEFNSKASRIGLGIHETSQKISRLAQLAKKSSMFNDPTVEIQELTALIKNDITALNSALSDLQTIQKMEIADGNYSDDRIAHSTTVCDDLKGKLMGATKQLQNVLTTRTENIKAHENRKHIFSKKASRDNPFQHRPKPVTEPPPWSNSLNASESSQQTSASLSNEVTPSNQLRRRLAADNTPSQQMEMSMMQQVVPRQESYSQSRATALHSVESTITELSGIFTHLATMVAHQGELAIRIDDNVDESLANVEGAHSSLLKHLSKISSNRWLLIKIFAILILFLLIFIFFVA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0050 356 ProSitePatterns Syntaxin / epimorphin family signature. 270 309 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele01g0050 356 MobiDBLite consensus disorder prediction 178 200 - -
Lele01g0050 356 Pfam SNARE domain 301 352 IPR000727 -
Lele01g0050 356 CDD SNARE_syntaxin5 267 339 - -
Lele01g0050 356 SUPERFAMILY t-snare proteins 64 319 IPR010989 GO:0016020|GO:0016192
Lele01g0050 356 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 264 326 IPR000727 -
Lele01g0050 356 MobiDBLite consensus disorder prediction 178 238 - -
Lele01g0050 356 MobiDBLite consensus disorder prediction 209 238 - -
Lele01g0050 356 Gene3D - 63 319 - -
Lele01g0050 356 PANTHER SYNTAXIN 66 351 IPR045242 -
Lele01g0050 356 SMART tSNARE_6 259 326 IPR000727 -
Lele01g0050 356 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 23 38 IPR021538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0050 Lele-ChrLele01 315382 318761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0050 18 356 SNARE and Associated Proteins AT5G05760 67.353 4.63e-154 434