Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0034 ATGCCGTTTCTCATTTTCTCAACCTCAGCCACGCCTTTAATCGGCACTCAACTGAAATTCAAGGCTTGTGAGAAAACTGTCTATCCTGTTGATCAACTATCCGCCGATGGCACTTCTTACCATAAGGCTTGCTTCAGGTGCTCTCAAGGAACCTTGAAGCTAAGCAACTATTCCTCAATGGAAGGTGTTCCCTATTGCAAGCCTCATTATGGGAAGCTCTTCAAGGAGACAGGCGGTTTCAACAAAAACTTCCAGTCTCGTATGTCTTCTTCTGCACGATATTGA 285 0.4491 MPFLIFSTSATPLIGTQLKFKACEKTVYPVDQLSADGTSYHKACFRCSQGTLKLSNYSSMEGVPYCKPHYGKLFKETGGFNKNFQSRMSSSARY 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0034 94 SMART lim_4 19 69 IPR001781 -
Lele01g0034 94 FunFam LIM domain and actin-binding 1 14 82 - -
Lele01g0034 94 Gene3D Cysteine Rich Protein 19 82 - -
Lele01g0034 94 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 44 84 - -
Lele01g0034 94 PANTHER OS06G0237300 PROTEIN 20 87 IPR045268 -
Lele01g0034 94 ProSiteProfiles LIM domain profile. 18 76 IPR001781 -
Lele01g0034 94 Pfam LIM domain 22 73 IPR001781 -
Lele01g0034 94 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0034 Lele-ChrLele01 234632 235556 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele01g0034 LIM 2.8e-09 CL0167