Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02522 ATGGAATATGGAGGTTTGGTGCACAATGGTGCATGTGGGAACTTCTCAGATATTTTTGCTCCAGAAACAGATTTTATGGATGAGCTATTTGTAGAAGGATGCTGGGTGGAAACAAGGGTTGGATGTGGAGGATCGTACCTTAATTGTGGTACGGAGGCTTCGAAGTCAAACAGGAGCATGGAGTCAAATGGGGGGCAAATAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGCGAATCCGGGGCCATCTTCGTCTGTGAAGGAGAGATTAGTGGCTGCGGTTGGGTACTTGAAAGAATACGCCAAGAGCTCCAATATGGTGATTCAGGTATGGGTGCCAGCACGGAGAGGATATGCAGTAGGGATTCATCAGGATTACCCATACACCCTTGACTATACTAATGCTACTAGTAATAATAACAATGGAGATGCAACAAGAGGCTTTCAGTTTCAGGAGGAGTGGCTTTCTGACCACTGGACTCCCAACATTCGCTTCCTCAGAAGTCACGACTACCCCCGCGTTCAGCAGTACGACCTACGCGCTGGATCTCTGGCCCTTCCCGTTTTTCAGAGAGGCAGTGGAATTTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACGTCAACCCGGACCTTCACAACCTTCAGGGTGTTGATTTTAGGAGTTCTTCTCATCAGAACTTCCTTCCACCAGCCATGACCGTGAAGGGTTTTGACGAGTTATACCAAGGTGCATTGAATGAGATAGTAGAAGTTTTGACGTGTGTGTGCAAGGCGCATGACTTGCCTTTAGCTTTGACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGCTGCGGGCACTCAAACGATGAGAATTATGTGTCCACTGTGGACCCAGCAAGCTTTCTGGCGGATGTAGATGTATTGGGATTCCTGGAAGCCTGCTCTGAGTACCACCTTTTGGGGGGGCAAGGAGTGGTTGGAACAGCTTTCACAACCTCCAAACCTTGCTTTGCAAATGACATAACTGCCTTCACCAAGGCTGAATATCCTCTGGCACACCATGCAAACATGTTCGGCTTGCATGCTGCTGTGGCCATTCCTCTCCGGAGTGTCTCCGCCGATTTTGTCTTAGAGTTTTTCCTGCCAAAGGATTGTCATGATAGCCACGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGTTGGTGCAGCAAGCTTGCCGGGATTTGCAGGTTGTAATGGATAAGGAGGAGGAGGAGGAGGAATTGGTGGTACACCATCATCATCATCATCATCATGATAGCAAAGAAATGGAATCATCCTCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTGTCGGTGTCTCTGGAGTACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAATGAACAGGTATTCTCGGAACTGGAAGGAACAGGCAGTGTTGTTGTTGGTGGCCGGCGGGGTGGCAGGAAATCGGGCGACAAGAGGCGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCTACCACTCTAAAAAGAATATGCAGACAACATGGGATTACGAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCATTAAGGAAACTTCAACTCGTGATCGACTCCGTCCAAGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGCTCTTCCAATGCCGTCTCGGAATCCTCCAAGATCAACAATGATAATTCGAAGTTTTATTCCGAGAATGGGTTGTTTAGTAACCAAGGAGTTACGACCACTGCTTCCACTTCTCCTTTCAAATCCCCAACTTCGTCTTGCAGTCAGACTTGTAACCCCGGTTCAAACCAATCAGCCACTATCATCAACAACAACAATAATAGCAATAGTGCTGATATTGTTCTGATGTCAGAGAACCAATCACTGATTGGTGCATCAATCCAAGTCCAAGGGTGCATAAATCCTCCCATTCCTATTCCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCGTTGCCCCAAAGTAGCAGTGTCTGGAACACGGGCAGTGGTAGTTTCAGAGTGAAAGCTACATTTGGAGATGAGAAAATCCGGTTTAGCTTGCAACCAAATTGGGGATTCAGAGATTTGCAGATGGAGATCGCAAGACGTTTCAATCTGAACGAGATCAGCAACATTCAGCTGAAGTATTTGGACGATGCTGAAGAGTGGGTTCTTTTGACATGCGATGCTGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAGTTAGACTATTCCTCTTTCATGCTTCGCCACTAAATCATCACCCCACAAATGCATTTGGCGGCACCAGCCCCACTTAA 2478 0.475 MEYGGLVHNGACGNFSDIFAPETDFMDELFVEGCWVETRVGCGGSYLNCGTEASKSNRSMESNGGQIIFEEESEAESLMVGKRWWIGPRANPGPSSSVKERLVAAVGYLKEYAKSSNMVIQVWVPARRGYAVGIHQDYPYTLDYTNATSNNNNGDATRGFQFQEEWLSDHWTPNIRFLRSHDYPRVQQYDLRAGSLALPVFQRGSGICLGVVEILMPNNVNPDLHNLQGVDFRSSSHQNFLPPAMTVKGFDELYQGALNEIVEVLTCVCKAHDLPLALTWAPCIQQGKSGCGHSNDENYVSTVDPASFLADVDVLGFLEACSEYHLLGGQGVVGTAFTTSKPCFANDITAFTKAEYPLAHHANMFGLHAAVAIPLRSVSADFVLEFFLPKDCHDSHEQKQMLNSLSMLVQQACRDLQVVMDKEEEEEELVVHHHHHHHHDSKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQVFSELEGTGSVVVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSSNAVSESSKINNDNSKFYSENGLFSNQGVTTTASTSPFKSPTSSCSQTCNPGSNQSATIINNNNNSNSADIVLMSENQSLIGASIQVQGCINPPIPIPIPIQSLDALPPLPQSSSVWNTGSGSFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAEEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHHPTNAFGGTSPT* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02522 825 SMART PB1_new 725 808 IPR000270 GO:0005515
Lapu9g02522 825 Pfam RWP-RK domain 520 567 IPR003035 -
Lapu9g02522 825 Pfam PB1 domain 726 807 IPR000270 GO:0005515
Lapu9g02522 825 SUPERFAMILY CAD & PB1 domains 714 810 - -
Lapu9g02522 825 ProSiteProfiles PB1 domain profile. 725 808 IPR000270 GO:0005515
Lapu9g02522 825 CDD PB1_NLP 726 807 IPR034891 -
Lapu9g02522 825 PANTHER PROTEIN NLP8 72 809 IPR045012 GO:0003700
Lapu9g02522 825 ProSiteProfiles RWP-RK domain profile. 506 587 IPR003035 -
Lapu9g02522 825 Gene3D - 726 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02522 Lapu-Chr9 39454642 39457406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02522 6 809 NLP Transcription Factor Family AT4G35270 42.632 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lapu9g02522 PB1 1.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02522 - - pvu:PHAVU_009G115800g 1435.62