Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02513 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTCAAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGGAAGATAGGAGGAATGCTGATGATCCTTACAGCTCAAGCTTTGGTCAGGCATCAACTGCTTGTATAATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGTAAGGATTCAAATTTCAAGCTAGAGCCAACTAATATGCTGGCAAGTGCAAAATATCCTTCCGTCATAAGCTCCGCTGCACATTTATCGTCAACTGAGGAACAACCAGCTGGTTTTCAGGTAAATCATGAAATAGAAGGGGTTAACAATCCTACCACACCTCCAGTCTTGTTTGGTGGAGTAGCCAAAGATAGCATTCATAAAAACTTAGGTATTAGCAGTGTAAATGACAGTTGCTCCTCTTCAAAGCCAGATACGGAAACTGAAGTAGATGTAAATGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGAATCCACTAGGGAAGAAGTGACGGAAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTAGAGAGTATTCTCCTGAAGATAATGTGGCTTGTGGGGAAAATGCTGTAATCACTGGTAATAGCTGCTGTTCCAGGTCTTGCAAAATATGTGATCGGTTAGACAGTTCACTGAACATGCTTTTATGTGATCAATGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTTGAAAAAGTTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAGAAAAATCTCAAGGAAACAAGTATCCACAATGAATTTGGCAAATGTAGAGCTACCTCAGGTAAGGGTGAATCGAATCCCATACTTTTGATGTTGATAGACACCGGGCCATATACAACTGGTGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGTCCAATAAAAAGCGATGAAGATGCCCTTCCTGAACCATTGGAAATTAATCCTTCAGACTTTAATAGACTGCTGGAAGAGAATACACGAAGTCCTACTAAACTTAGTGCCATTGGTAATTGGATTCAATGCCAGGCAGTTATAGATAGGGCCAATGGAACTATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTGATGTCTGGGAGTGCTTTTGTGCTATCCACTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAGTATGTGGAAGTGCTACGGCCGCGAGTTGCTGCTAAACGGAAAAAATCAGATAGCACACAAAATAATGATTGA 1446 0.4115 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNRYPLDWCRKAEPVEEDRRNADDPYSSSFGQASTACIMTENTTPKPKMVYRRKKLRKDSNFKLEPTNMLASAKYPSVISSAAHLSSTEEQPAGFQVNHEIEGVNNPTTPPVLFGGVAKDSIHKNLGISSVNDSCSSSKPDTETEVDVNGECSSSSVIVMESTREEVTEKDFCINTLRTHGLLREYSPEDNVACGENAVITGNSCCSRSCKICDRLDSSLNMLLCDQCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKNLKETSIHNEFGKCRATSGKGESNPILLMLIDTGPYTTGVRVGKGFQAEVLDWSGPIKSDEDALPEPLEINPSDFNRLLEENTRSPTKLSAIGNWIQCQAVIDRANGTICGKWRRAPFFEVQTDVWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRVAAKRKKSDSTQNND* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02513 481 Gene3D - 394 459 - -
Lapu9g02513 481 ProSiteProfiles Zinc finger PHD-type profile. 248 298 IPR019787 -
Lapu9g02513 481 Pfam PHD-finger 251 297 IPR019787 -
Lapu9g02513 481 ProSiteProfiles Zinc finger CW-type profile. 390 450 IPR011124 GO:0008270
Lapu9g02513 481 SMART PHD_3 250 296 IPR001965 -
Lapu9g02513 481 SUPERFAMILY FYVE/PHD zinc finger 249 301 IPR011011 -
Lapu9g02513 481 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 238 309 IPR047171 GO:0006338
Lapu9g02513 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 320 IPR013083 -
Lapu9g02513 481 ProSitePatterns Zinc finger PHD-type signature. 251 295 IPR019786 -
Lapu9g02513 481 FunFam uncharacterized protein LOC106759733 isoform X4 394 459 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02513 251 296 C2H2 Transcription Factor Family AT3G01460 41.304 4.01e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu9g02513 PHD 1.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02513 - - gmx:100813057 816.994