Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02503 ATGGTGGTCGGGAGAGTTGCTGTTCCCTCCAATCTCTTCCACACTCCTTCTTCTGCTGCCACGCTCATACCTCCCCACACTCGCCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCTCCTCCTCCTCCTCCGCCAATCACACTCGTGACACACCCACTACCAACAACGATTCTCCCTTTTCAACTTTCGGAAAACTCAAGGCTCAGAAACTGAAAACTGTGCTCCACAGAAGCAAGGAGCGAAGACGCGTCCTTCAAGTTGAAGAAGAAGACGATAACGATGATGATGACGAGAATCACGCATCCCCCAGAGCCAGGCCTTCGCAGTCTCGGTCTCGGTCTCGGTCAGGTGGACGAGAACAAGGAGGATGGGATATGATTCCCCGGTTTCCCTCACAAGCCAAATCAACCACTGACACCAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGCCATGGCATTTACTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACATTGGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACTTGAAGGACGTAGTAAATCCTCTTCCCAAGCTCCTAGAGTCCTTGTACTCGCACCCACTGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCCTTGTCAAAATCTGGGCTTCCATTCAAATCTATGGTTATCACGGGAGGTTTTCGACAAAGGACTCAACTGGAAAATTTACAGCAGGGAGTTGATGTCTTGATAGCTACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTGTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATGCCTGATCAGTTCATCTCCTGTTGACACACAGTATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCCGATTGTGAAATGATTATGGGGCCTGGTATGCATCGTATAAGTTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAGGAAAAAAATCCTGATACAGCATTTTTGAACAAGAAAACCGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATTCATTAAAGCGTTTTGATAGAAAAGGAAATCGCATGCAAATTCTACCCTTCCATGCCGCCATGACTCAAGAATCACGTCTTGCTAGCATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGGGCTTCACGGGGAATAGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGAGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCGAAGGGAGTAGGGAAGGCATTTATTTTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCGGAAGGGTCACCCACTACATGATGTGCCTTCCGCATATTAG 1647 0.4584 MVVGRVAVPSNLFHTPSSAATLIPPHTRLLSFSASAAASSSSSANHTRDTPTTNNDSPFSTFGKLKAQKLKTVLHRSKERRRVLQVEEEDDNDDDDENHASPRARPSQSRSRSRSGGREQGGWDMIPRFPSQAKSTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQAMAFTPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEELEGRSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGLPFKSMVITGGFRQRTQLENLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLISSSPVDTQYLFVTATLPKNVFTKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEDGQEKNPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNRMQILPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVPSAY* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02503 548 Pfam Helicase conserved C-terminal domain 393 509 IPR001650 -
Lapu9g02503 548 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 546 - -
Lapu9g02503 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 548 IPR001650 -
Lapu9g02503 548 Gene3D - 366 542 IPR027417 -
Lapu9g02503 548 SMART helicmild6 420 510 IPR001650 -
Lapu9g02503 548 Gene3D - 108 356 IPR027417 -
Lapu9g02503 548 CDD DEADc 156 343 - -
Lapu9g02503 548 CDD SF2_C_DEAD 369 520 - -
Lapu9g02503 548 SMART ultradead3 164 372 IPR014001 -
Lapu9g02503 548 MobiDBLite consensus disorder prediction 40 62 - -
Lapu9g02503 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 521 IPR027417 -
Lapu9g02503 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 357 IPR014001 -
Lapu9g02503 548 MobiDBLite consensus disorder prediction 81 135 - -
Lapu9g02503 548 Pfam DEAD/DEAH box helicase 170 343 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02503 Lapu-Chr9 39309146 39314230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02503 144 518 Eukaryotic Initiation Factors Gene Family AT3G19760 27.105 2.31e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02503 K13179 - gmx:100784377 812.372