Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02500 ATGGACATGGGTGATGACACTGCTACTGCTGCACCTCACTGTGGTTTGACATCTGAAGAGGAGCAGATGTGGTTTAGTTTCCTTCAACTGGAACACGCTCATGCTCATGGTGTTGAGGAGGATCCTTCTGTCGAAACAGGAATGGAATGCGAATATGGCGGTGAATCACACCGAGCAGCCTCGTTAAGTAGGTTCCGCCAGAAGAGGAAACGACGATGCTTTGCTAATAAAGTAAGATACACAACACGTCAAGAAGCCACTCTCAGGGTACATCGTAGTAAGAACGAGTTTATTTTGTCCAAAATCCAGGAGTCGGGGCAAGATGATATCCACTCAGAAATGTTGAATTGTGGCATTAGTTCAAAATGCACGCCTATGATGCGGCGAGGGCCATCTGGACCAGGATCACTTTGCAACGCTTGTGGCCTTTCTTGGGCAAACAGGGGTGTCTTCAACTATAAGAAACCACTTTAA 474 0.4684 MDMGDDTATAAPHCGLTSEEEQMWFSFLQLEHAHAHGVEEDPSVETGMECEYGGESHRAASLSRFRQKRKRRCFANKVRYTTRQEATLRVHRSKNEFILSKIQESGQDDIHSEMLNCGISSKCTPMMRRGPSGPGSLCNACGLSWANRGVFNYKKPL* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02500 157 Gene3D - 115 157 IPR013088 GO:0006355|GO:0008270
Lapu9g02500 157 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 151 - -
Lapu9g02500 157 Pfam CCT motif 58 98 IPR010402 GO:0005515
Lapu9g02500 157 ProSiteProfiles CCT domain profile. 58 100 IPR010402 GO:0005515
Lapu9g02500 157 PANTHER GATA TRANSCRIPTION FACTOR 28 55 151 IPR045280 GO:0006355
Lapu9g02500 157 SMART GATA_3 108 155 IPR000679 GO:0006355|GO:0043565
Lapu9g02500 157 CDD ZnF_GATA 116 150 IPR000679 GO:0006355|GO:0043565
Lapu9g02500 157 Pfam GATA zinc finger 116 150 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02500 Lapu-Chr9 39293006 39293985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02500 42 151 Tify Gene Family AT4G24470 54.918 4.11e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu9g02500 CCT 2.4e-08 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02500 - - vra:106760511 240.35