Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02484 ATGCTACACTTTATTACGGGAATTGAAGCAATGCGAAGGGCGATCTCCTTTCTCGTTCAACCGCGATGCCTTCTTCTCGTCATTGTTCTGACAATTTTCTTGATTCTCGCAATATCTGGATCCAGACGGGTTGAAGAGAAAGAAGAAGAAGAGCCTGAAATTACGGACAGAGTATTCTTGGATGTTGATATTGATGGACAACGTTTAGGTAGGATTGTCATTGGATTATATGGACAAGTTGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAGAAAGGAAAGAATGCCAATGGTGTAAAACTTCATTACAAAGGAACACCATTCCATAGGATAATATCAGGTTTCATGTTTCAGGGTGGTGACATTGTCCACCGTGATGGCAGAGGATATGAATCTATTTATGGTGGTACCTTTCCTGATGAGAATTTCAAGATAAAACATTCACATGCGGGTGTAATCTCGATGGTGAATTCAGGTCCTGATTCCAATGGCTCACAGTTTTTTATTACCACAGTGAAGACCGGTTGGTTAGATGGAGAACATGTTGTGTTTGGAAAGGTTGTCCAAGGCATGGATACTGTGTTTGCAATTGAAGGGGGTGCTGGAACCTACAATGGGAAACCCAGAAAGAAAGTAGTCATTGCAGACTCTGGACTCTGGAGAGATACCCAAGAGTCTGTGTGA 696 0.4195 MLHFITGIEAMRRAISFLVQPRCLLLVIVLTIFLILAISGSRRVEEKEEEEPEITDRVFLDVDIDGQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKNANGVKLHYKGTPFHRIISGFMFQGGDIVHRDGRGYESIYGGTFPDENFKIKHSHAGVISMVNSGPDSNGSQFFITTVKTGWLDGEHVVFGKVVQGMDTVFAIEGGAGTYNGKPRKKVVIADSGLWRDTQESV* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02484 231 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 62 220 IPR002130 GO:0000413|GO:0003755
Lapu9g02484 231 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 107 124 IPR020892 GO:0003755|GO:0006457
Lapu9g02484 231 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 57 222 - -
Lapu9g02484 231 SUPERFAMILY Cyclophilin-like 54 226 IPR029000 -
Lapu9g02484 231 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 59 223 IPR002130 GO:0000413|GO:0003755
Lapu9g02484 231 FunFam Peptidyl-prolyl cis-trans isomerase 44 229 - -
Lapu9g02484 231 Gene3D - 43 230 IPR029000 -
Lapu9g02484 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 112 124 IPR002130 GO:0000413|GO:0003755
Lapu9g02484 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Lapu9g02484 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Lapu9g02484 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Lapu9g02484 231 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02484 Lapu-Chr9 39119595 39125166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02484 70 224 U-box Gene Family AT5G67530 40.385 4.15e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02484 - - vra:106760817 407.527