Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02478 ATGAGTGAGAGTGAGAAGCAGAGGGTAACCGGAAAGGTGAAGTGGTTCAATGACCAGAAGGGATTTGGCTTCATAACCACCGACGACGGCGGCGAGGATCTCTTCGTTCACCAGTCCTCCATCCGATCCGACGGTTTTCGCAGCCTCGCCCTCGGAGAGTCCGTCGAGTTCCTCATCGACTCCGATTTGGAAGGTCGCACCAAAGCCGTCGACGTCACTGGTCCTGACGAATCGCCCGTGCAGGGCACTCGTGGTGGCGGAGGAGGAGGAAGAGGGGGATTTGGCGGCGGCGGCGGTGGAAGAGGCGGCTATGGCGGACGCGGCGGGCGAGGTGGTTATGGTGGCGGTGGCGGGTATGGTGGAGGTGGCTATGGCGGAGGTGGCGGATATGGTGGCGGTGGTGGTGGAGGGGGTTGCTATAAGTGTGGTGAGACAGGTCACATAGCGAGGGACTGCAGCCAAGGTGGCGGTGGCGGTGGAAGGTACGGGGGAGGTGGTGGCGGCGGCGGTGGTGGGAGCTGCTACAACTGTGGGGAGTCTGGGCATTTTGCGAGGGACTGCCCTTCAAATGCCCGTTGA 579 0.6235 MSESEKQRVTGKVKWFNDQKGFGFITTDDGGEDLFVHQSSIRSDGFRSLALGESVEFLIDSDLEGRTKAVDVTGPDESPVQGTRGGGGGGRGGFGGGGGGRGGYGGRGGRGGYGGGGGYGGGGYGGGGGYGGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGGGSCYNCGESGHFARDCPSNAR* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02478 192 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Lapu9g02478 192 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Lapu9g02478 192 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Lapu9g02478 192 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Lapu9g02478 192 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Lapu9g02478 192 SUPERFAMILY Retrovirus zinc finger-like domains 129 190 IPR036875 GO:0003676|GO:0008270
Lapu9g02478 192 Pfam Zinc knuckle 173 189 IPR001878 GO:0003676|GO:0008270
Lapu9g02478 192 Pfam Zinc knuckle 138 154 IPR001878 GO:0003676|GO:0008270
Lapu9g02478 192 ProSiteProfiles Zinc finger CCHC-type profile. 139 154 IPR001878 GO:0003676|GO:0008270
Lapu9g02478 192 Gene3D - 1 85 IPR012340 -
Lapu9g02478 192 PANTHER COLD SHOCK DOMAIN PROTEIN 2 107 190 - -
Lapu9g02478 192 FunFam Universal minicircle sequence binding protein (UMSBP), putative 167 192 - -
Lapu9g02478 192 SUPERFAMILY Nucleic acid-binding proteins 7 74 IPR012340 -
Lapu9g02478 192 Gene3D - 169 192 - -
Lapu9g02478 192 Gene3D - 135 161 - -
Lapu9g02478 192 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Lapu9g02478 192 CDD CSP_CDS 9 74 IPR002059 GO:0003676
Lapu9g02478 192 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Lapu9g02478 192 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Lapu9g02478 192 SMART csp_8 10 75 IPR011129 GO:0003676
Lapu9g02478 192 MobiDBLite consensus disorder prediction 69 98 - -
Lapu9g02478 192 ProSiteProfiles Zinc finger CCHC-type profile. 174 189 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02478 Lapu-Chr9 39078331 39079370 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lapu9g02478 CSD 7.3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02478 - - gmx:100820359 214.157