Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02449 ATGGACGAGGAAGAACGTGACCAAGGAGGTTCTGTCCCGGGGGTTGTTGCCGCCGACCAAACTCCACAGCAACTCGTCTCCAGGGCCATAGCCCCCGTCAAGAAGGATTTCCTCCGCCCCCCTCCGGTTCGGTCTTCCGCTCCAAACGACGACGTTTCCATTCCCAACGAAAACAAGACTTCCGTTCTGGCCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGCCAGGAACAAAAGTCAGCACGAAACCTTTGCCCCGAAATTGCGAAGACGGGGGATGTTAGTTCGTGTCCTTATAAAGACAAGTGTCGCTTCAGCCATGATTTGGAAGGCTTCAAGGCGCAGAAACCGTCTGATCTAGAAGGACAATGTCCGTTCATTAAATCCGGAGGCTCTTGCCCTTATGGCTTAGCGTGTAGATTTTCGAGTACGCATGAAGGTGGTGTGCCTTCTGGTAATCGAAATGGTCTGAAGAATAGCTCCGAGGTGAATGGATTGAGCAAGGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGCTTCTCCAAGGCAGATTCGAAACTCAAAAGTCTCGGCCTCCTGGGACCGTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGGAGTTGACCCTGGTTCAAATAAGTGTGATCATTCTGATGACAGTGGCTCTTGTGTTGTTGCGTCTGACTCAGGTTCTAAGTTGGAATGCCCTGCTGAAGTTATTAAAGATGACGACAATAACATAGATGGAAAATCTGAATCTGATGAACTTTGTCCCCTAAAGCGAAGAAAAACTGAAGAAAATTGCAATCCTAAAGAGACAGAAAATAAAGAGAATTGTGGTCCTAAGGAGGCAGAAAGTGAAGTTTGTGTAACTTGGGTTCACATAGCTGATACAGGTGTTACTGAGCAAATTGTTGAAAGAAGTTGTTCAAAATCTGAAGCTGATGCTCTGGTTCCAGAAACTGATCTAAGCCTGAAGCTTCACTCACGTGAGAAGAAGCTTATTGATTTTAGGGGGAAGTTATATCTTGCACCCTTAACTACTGTTGGCAATCTCCCTTTTCGGAGAGTTTGCAAAGTGTTAGGCGCCGATGTAACTTGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCGTCAGAATGGGCATTGCTAAGACGACATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCAGATACTGTGGCGCGAACAGTTGAACTAATAGAGCAGGAATGTTCAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTTTAACAAAACCAATGCGGATGAAAAGTATAGTAGAAGTAGCTTCGGGTACAGTGGATAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGGAAGAACCGCATTGATTCTCTGATAGCAGACATTGGCTCTTGGGGAGCCAGTGCCGTGACAATACATGGTAGGTCACGTCAACAACGGTATAGCAAACTTGCTGACTGGGACTACGTGTACCAGTGTGCCAGGAAAGCCCCTACTACATTGCCAGTAGTGGGGAATGGAGATGTTTTTTCTTTTGTAGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACGGACATGATTGCTCGTGGTGCACTGATTAAACCCTGGATATTTACGGAGATCAAGGAACAAAGACATTGGGACATCAGTTCTGGGGAGCGACTAAATATTCTCAAGGATTTTGTGAATTTTGGTCTTGAACACTGGGGTTCTGACACAAAAGGGGTTGAGACAACAAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGCAGGTATATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGGTTAAACTGGCGTCCACCTTGTTACTGTGGGCGTGATGAGCTTGAGACACTAATGGCCTCAGACTCTGCTGCTGATTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCTGATGGTTTTACATTTGCACCAAAGCATAAATCAAACGCTTACGATAGAGCCGAAAATGGTTAA 2097 0.4483 MDEEERDQGGSVPGVVAADQTPQQLVSRAIAPVKKDFLRPPPVRSSAPNDDVSIPNENKTSVLAKEKKSKRQLKRERRQEQKSARNLCPEIAKTGDVSSCPYKDKCRFSHDLEGFKAQKPSDLEGQCPFIKSGGSCPYGLACRFSSTHEGGVPSGNRNGLKNSSEVNGLSKDVQKLLWKNKMSFSKADSKLKSLGLLGPSKSKRNDLENKDGVDPGSNKCDHSDDSGSCVVASDSGSKLECPAEVIKDDDNNIDGKSESDELCPLKRRKTEENCNPKETENKENCGPKEAESEVCVTWVHIADTGVTEQIVERSCSKSEADALVPETDLSLKLHSREKKLIDFRGKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECSIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGNGDVFSFVDWNNHRTECPELATDMIARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVNFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPCYCGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02449 698 Coils Coil 56 83 - -
Lapu9g02449 698 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 21 692 - -
Lapu9g02449 698 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 78 156 - -
Lapu9g02449 698 CDD DUS_like_FMN 346 581 IPR035587 -
Lapu9g02449 698 Gene3D - 77 152 - -
Lapu9g02449 698 Gene3D Aldolase class I 342 584 IPR013785 -
Lapu9g02449 698 MobiDBLite consensus disorder prediction 195 225 - -
Lapu9g02449 698 ProSiteProfiles Zinc finger C3H1-type profile. 82 113 IPR000571 GO:0046872
Lapu9g02449 698 MobiDBLite consensus disorder prediction 1 88 - -
Lapu9g02449 698 Pfam Dihydrouridine synthase (Dus) 349 583 IPR035587 -
Lapu9g02449 698 MobiDBLite consensus disorder prediction 203 221 - -
Lapu9g02449 698 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 342 584 - -
Lapu9g02449 698 SUPERFAMILY FMN-linked oxidoreductases 346 659 - -
Lapu9g02449 698 ProSitePatterns Uncharacterized protein family UPF0034 signature. 430 448 IPR018517 GO:0008033|GO:0017150|GO:0050660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu9g02449 Dus 3.4e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02449 K05544 - gmx:100783494 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02449 9 38898345 38903858 Lapu9g02449 9 38898345 38903858 ECH