Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02439 ATGGACGCCGAGGATGACGAAGCTCCACTCCAATCACGCTCTGATGAACAATGCCACACCGACATGCAAAATATCCCCTACGCCGCCGCGGGAGACCCCGAACCCGATACGGCGAGGGAGCTGAGCGCCGCGGCGGCGGCGGCCCAGGAGGTGGTCGCTGTTGAACCCGATGCGACGATGGAGACGGTGGTCGAGTCCAACGAGGGCGTTGGAACGCAAGTGATGGACGAGGTAATTGAGGAAAAGGAGAATGAGGTAACCGATGTGGATGTGGCTTTGGATGACGTGACTTTGGAGATGGAGAACGTGGAAGAGGAAGCGAATTTGACAATTGATGCCGAAGAGGATGAAATTCGGGACGAAGGCGCTTTGATGGAAGAAGAAGATGAACAGCAACAAGGAGAGGAGGAGGAGGTGGAAGAAGAAGAAAAACAGCAACAAGGAGAGGAGGATGAGGAAGAGGAACAACAACAAGGTGAAGAGGAGGAGGAGGAGGAAGAAGATGAAGAAGAAGAACAGCAACTAGGAGAAGAAGAAGAACAGCAACAAGGGGAAGAAGAAGATGCTGATGCTGGAATGACAAAAACAGAAGATACAGAGCAGGAGGAGAAGAGTGCTAGTGGTGGGAAGAGGAAGCGTGGTGCTGGGAAGAATGCTAAGACTACAGGAAGAGTTGCTTCCAGGAAGAAGACGGAAGAGGATGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGTCCAAAGGCTTACCATCCCTCCTGCGTTAATCGTGATGAGGCATTCTTTCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGTAGCAACTGTGAGAGGAATGCAAACTATATGTGCTATACATGTACATTTTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTATGTGTCAGGGGAAACAAGGGGTTTTGTGAGACATGCATGAGAACCGTAATGTTGATTGAACAGAATGTGCAGGGAAGCAATGTGGGACAAATAGATTTTGATGACAAAAACAGCTGGGAGTATCTTTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAAATCACTCAATCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAGGAATCACCAGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCTGATAGCTCCTATGAGAATGATTTGAGTCGCTCTAAAAGAAGAAAGTCAAAGAAACGGGGTAAGTCCCGTAACAAAGAAGGAAATTCGTACAGTTCAGTGACAATGCCTGGTGCTGATGGGCCATCGGGAGCTGACAGCTCTGAGTGGGCTTCGAAAGAGCTTCTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTCGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATATGTGATGCAAGACTTCAAAATCTTTTTGGTAAACCAAGAGTGGGACATTTCGAGATGCTAAAGCTTCTTGAGTCTCATTTCCTTCTAAAAGAAGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACAGAAATTAGTCATTTGGAAGGAGATGGGAATCCCAATTCTTATACGAAAACTGGCAAAGATAAGAGGCGTAAAAATCGCAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCTATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAATTTGGTTGAAGATCTACTTGAAGATTCAGAAAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGGCATATAAAGTTGGTAAAAGGATGACAGACACGTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTGTCAATTGATATTATCTCAAATCAGGAGTTCACTGAGGACGAATGCAAACGTCTCCGCCAAAGCATAAAGTGTGGTCTCATAAATCGGCTAACTGTGGGTGACATACAGGACAAAGCATTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAAAAAGGACGCCGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTAAAGACACCTGAAGAACGACAACGTAGATTGGAGGAAATTCCAGAGATACATGTGGATCCAAACATGGATCCCAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGATGATAGAAGACGAGAAAACTACATGAGACCTAGAGGGTCTACTTCCTTTGGAAAGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGTTTCTATTTCAAATGATACTTGGACTGGAACGAGGAATTATTCCAATGCGAATCAGGAACTTAGCAGAAATTTGTCCAATAAGGGATTTTCAATGAAAGGTGAAAATGCTTCTAATGTTAATGAGGCACTGAATGATTCTCAATTGCACCAAGGAAGAGATAGGGAATCACAATCATCTAATAGCTGGGAGAGGCAAAAACTCTCTTCAAACTTGGAAAGTGGTGCTAAAAGTACCCAATCATTGGTAACATCTGATTCTTTCTCTAATGCTGTATTGGAAGCTTCTGCAGTACCATCTGCTGGAATAACTCCTCCAGCTGTGAAAATTAATGAGACTGAAAAGACGTGGCATTACCAGGATCCTTCCGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGTTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCGTAACAGATGCCTTGGCAGGGAATTTTTCTAAAGAGCCATCGATGGTGGATAAGGCTCAAAAGGTGCATGATTTACATTACCCAGCCTCGTACCCTAGGAAGTCTGCACAAGGTATGGAAGGTCAAGTTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTTGAATTCACATAGTACTCTGGGTTCTCCGGTACAAACCACAGGCGGAAGTTGGAGATCTAAAGATAATATGAGCTCTTTAGCAAATAGAACCACTTCATTGGCAGTTGAGGTCCCTAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTAGTAGAAACGAAGCAACAAATCTTCCTTCACCTACACCTCAGACTACCCCTGGTGTGACTAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCTTAGGAAATTCATTCCCAGGCAATCATGGAGGTTTGCAGCCCACTTTGGTAGTGCACCCAGAGCATGCTGTACAAAATCCTGAAAAAGGCTCTTCACAACCTGGTGTTAGTTCAGCGTCTGCAGAAAATTCCAGGTTACATCCTCAACCAGCAGCAGTGGCACCTGTTCTGCCTTCAGGGGTTGACCTCAAAATGGCAGGTACAAATATGCAAAACCAGGTTGTGCGTAGCCACAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACTGCAGGCTTGGGGAGGTGTATCGTCCCAACCAAATAATCCTGCTACTATGCCTGCCCAGCCAGCACCCCATGGCCCCTGGGTTGATGCTTCATCTGTGCAGAACACTGCCTCGTTTAACACGGGGAATCCATCTGCAAGTTTACCCACACCTGGATTTATGGGCATGAGTACACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGCCAAACATCACAGCTCCTTCTCCAGCTCCACCCAATATGCCTTGGGGAATGGGCATGCCAGGAAATCAGAATATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAATATGAACGCAAACTGGATGCCTGCGCAGGTGCCAGCACCAGGAAATTCAAATCCAGGATGGGTTGCCCCTAGTCAAGGGCTACCTCCAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGTGAATGCAGGTTGGGTTGGGTCTGGTCAGGGTCTAACGCCTGGAAATGCCAATTCTGTTTGGGTTCCACCGTCTGGGAATCCAGGAATGTGGGGAAGTGAGCAAAGTCATACTGGAGATCGGTTTCCCAACCAAGGGGATCGTGGTGCTCACGGTAGAGATTCTGGTTATGGTGGCAAATCTTGGAACAGGCAGTCATCATTTGGCAGAGGAGCTTCTTCCAGGCCTCCTTTTGGGGGACAACGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGTGATTCTTGTGATTTTCTACACACTTAG 4470 0.4521 MDAEDDEAPLQSRSDEQCHTDMQNIPYAAAGDPEPDTARELSAAAAAAQEVVAVEPDATMETVVESNEGVGTQVMDEVIEEKENEVTDVDVALDDVTLEMENVEEEANLTIDAEEDEIRDEGALMEEEDEQQQGEEEEVEEEEKQQQGEEDEEEEQQQGEEEEEEEEDEEEEQQLGEEEEQQQGEEEDADAGMTKTEDTEQEEKSASGGKRKRGAGKNAKTTGRVASRKKTEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNANYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNVQGSNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDEITQSKNPWKGSDMLHSKEESPDELFDATNDRGSDSDSSYENDLSRSKRRKSKKRGKSRNKEGNSYSSVTMPGADGPSGADSSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYTKTGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDSEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEAYKVGKRMTDTLLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDRRRENYMRPRGSTSFGKRGRDIVSPRSVSISNDTWTGTRNYSNANQELSRNLSNKGFSMKGENASNVNEALNDSQLHQGRDRESQSSNSWERQKLSSNLESGAKSTQSLVTSDSFSNAVLEASAVPSAGITPPAVKINETEKTWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDDSILVTDALAGNFSKEPSMVDKAQKVHDLHYPASYPRKSAQGMEGQVGERPTFDQNSGSLNSHSTLGSPVQTTGGSWRSKDNMSSLANRTTSLAVEVPKNPANGWGSDAGSRNEATNLPSPTPQTTPGVTKGQAFENKWSPTPVQLPGSLLGNSFPGNHGGLQPTLVVHPEHAVQNPEKGSSQPGVSSASAENSRLHPQPAAVAPVLPSGVDLKMAGTNMQNQVVRSHNSHAEAQGWGSAGVPKPELQAWGGVSSQPNNPATMPAQPAPHGPWVDASSVQNTASFNTGNPSASLPTPGFMGMSTPEPWRPPASSSQPNITAPSPAPPNMPWGMGMPGNQNMPGNQNMNWGGVVPANMNANWMPAQVPAPGNSNPGWVAPSQGLPPVNAVGWVGPGQGRSHVNVNAGWVGSGQGLTPGNANSVWVPPSGNPGMWGSEQSHTGDRFPNQGDRGAHGRDSGYGGKSWNRQSSFGRGASSRPPFGGQRGVCKYHESGHCRKGDSCDFLHT* 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02439 1489 ProSiteProfiles Zinc finger C3H1-type profile. 1464 1489 IPR000571 GO:0046872
Lapu9g02439 1489 ProSiteProfiles Zinc finger PHD-type profile. 233 299 IPR019787 -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 102 225 - -
Lapu9g02439 1489 SUPERFAMILY CCCH zinc finger 1467 1488 IPR036855 GO:0046872
Lapu9g02439 1489 SMART PHD_3 235 281 IPR001965 -
Lapu9g02439 1489 FunFam Zinc finger CCCH domain-containing protein 19 225 325 - -
Lapu9g02439 1489 Pfam Plus-3 domain 596 699 IPR004343 GO:0003677
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1208 1313 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1258 1281 - -
Lapu9g02439 1489 SMART gyf_5 940 995 IPR003169 GO:0005515
Lapu9g02439 1489 CDD PHD5_NSD 235 280 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1414 1466 - -
Lapu9g02439 1489 Pfam GYF domain 942 982 IPR003169 GO:0005515
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 549 580 - -
Lapu9g02439 1489 CDD SWIB-MDM2_like 455 530 - -
Lapu9g02439 1489 Gene3D - 593 721 IPR036128 GO:0003677
Lapu9g02439 1489 ProSiteProfiles GYF domain profile. 939 993 IPR003169 GO:0005515
Lapu9g02439 1489 PANTHER UNCHARACTERIZED 125 1489 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 382 417 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 766 785 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 823 840 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 870 903 - -
Lapu9g02439 1489 ProSiteProfiles SWIB/MDM2 domain profile. 449 532 IPR003121 -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1159 1178 - -
Lapu9g02439 1489 Coils Coil 86 188 - -
Lapu9g02439 1489 ProSitePatterns Zinc finger PHD-type signature. 236 296 IPR019786 -
Lapu9g02439 1489 FunFam Zinc finger CCCH domain-containing protein 19 443 537 - -
Lapu9g02439 1489 Pfam SWIB/MDM2 domain 457 530 IPR003121 -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1089 1143 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1 44 - -
Lapu9g02439 1489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 327 IPR013083 -
Lapu9g02439 1489 Gene3D - 941 999 IPR035445 -
Lapu9g02439 1489 CDD Bbox1 281 307 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 380 452 - -
Lapu9g02439 1489 SUPERFAMILY Plus3-like 592 720 IPR036128 GO:0003677
Lapu9g02439 1489 SMART swib_2 450 535 IPR019835 -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 766 840 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 188 210 - -
Lapu9g02439 1489 Gene3D SWIB/MDM2 domain 446 540 IPR036885 -
Lapu9g02439 1489 ProSiteProfiles Plus3 domain profile. 591 724 IPR004343 GO:0003677
Lapu9g02439 1489 SUPERFAMILY GYF domain 931 992 IPR035445 -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1033 1080 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 102 187 - -
Lapu9g02439 1489 FunFam Zinc finger CCCH domain-containing protein 19 941 998 - -
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 1019 1182 - -
Lapu9g02439 1489 SUPERFAMILY SWIB/MDM2 domain 454 531 IPR036885 -
Lapu9g02439 1489 FunFam Zinc finger CCCH domain-containing protein 19 592 721 - -
Lapu9g02439 1489 SMART rtf1 591 701 IPR004343 GO:0003677
Lapu9g02439 1489 SUPERFAMILY FYVE/PHD zinc finger 231 287 IPR011011 -
Lapu9g02439 1489 CDD GYF 939 994 IPR003169 GO:0005515
Lapu9g02439 1489 MobiDBLite consensus disorder prediction 887 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02439 Lapu-Chr9 38815745 38829614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02439 233 306 PHD Transcription Factor Family AT4G14920 39.189 1.19e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lapu9g02439 Plus-3 8.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02439 - - gmx:100815079 2290