Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02434 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGGGAGAGTTCATCGTTCAGCAAACGCACTGCGAGGATTTTTTCTGCCTTAACGCCAACACCGGCGCCGGAGGCGATGATTTCTTCGTCGACGACCTATTTGACTTCTCAGACGGCTCTCTTCACTACGAACAACAACAAGAATACGTCGAAGAAAAAAAAAGTTTATCGGCTTCGTCGCAGTCGCAGGACCGCGGAGAAGACGATAGCAACTCCAATTCCACCGGCGTTTCCTATGATTCACTTTTCTCCGCCGAATTAGCCGTTCCGGCCGGTGATTTGGAGGACCTAGAGTGGGTTTCACACTTTGTGGACGATTCTCTCCCGGAGCTGTCACTTTTATACCCGGTTCGTTCGGAGGAAGCGAACCGGCGGGTTGAACCGGAACCCTCAGCGAAGAAAACGCCTCGTTTTCCGTGTGAAATGAAAATAACGACCAAGGCGAGAACTGTACGGAATAGAAAGCCTAACGCTCGCGTGTGGTCATTGGGCCCGTTGCTCTCGCTCCCGTCCTCGCCGTCTTCGTGTTCTTCTTCCGTGTCGGAGCCGCCTGCGAAGAAGCAGAAGAAACGGGCCGAGGCCCAGCCCGTTGGGGGCCAGGTTCAGCGGCGGTGCAGTCACTGTCAGGTGCAGAAGACGCCCCAGTGGAGGACGGGCCCACTGGGCGCGAAAACCCTCTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGCTTTTTTCGGAGTACAGACCGGCTTGTAGCCCAACCTTCTGCAGCGATATTCACTCCAATAGTCACCGGAAAGTGTTGGAGATTCGGAAGAAGAAAGGGGTGGCTGGACCGGACACCGGTTCCGCCCAGGCCCAAATGGTTCCCACCTACTAA 906 0.5552 MEVAVAKALKPSLRGEFIVQQTHCEDFFCLNANTGAGGDDFFVDDLFDFSDGSLHYEQQQEYVEEKKSLSASSQSQDRGEDDSNSNSTGVSYDSLFSAELAVPAGDLEDLEWVSHFVDDSLPELSLLYPVRSEEANRRVEPEPSAKKTPRFPCEMKITTKARTVRNRKPNARVWSLGPLLSLPSSPSSCSSSVSEPPAKKQKKRAEAQPVGGQVQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGVAGPDTGSAQAQMVPTY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02434 301 MobiDBLite consensus disorder prediction 182 196 - -
Lapu9g02434 301 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Lapu9g02434 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 273 - -
Lapu9g02434 301 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Lapu9g02434 301 MobiDBLite consensus disorder prediction 182 211 - -
Lapu9g02434 301 CDD ZnF_GATA 217 274 IPR000679 GO:0006355|GO:0043565
Lapu9g02434 301 PIRSF Txn_fac_GATA_plant 12 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lapu9g02434 301 MobiDBLite consensus disorder prediction 60 89 - -
Lapu9g02434 301 ProSiteProfiles GATA-type zinc finger domain profile. 216 248 IPR000679 GO:0006355|GO:0043565
Lapu9g02434 301 SMART GATA_3 212 266 IPR000679 GO:0006355|GO:0043565
Lapu9g02434 301 Gene3D - 211 262 IPR013088 GO:0006355|GO:0008270
Lapu9g02434 301 MobiDBLite consensus disorder prediction 65 89 - -
Lapu9g02434 301 PANTHER GATA TRANSCRIPTION FACTOR 28 295 - -
Lapu9g02434 301 FunFam GATA transcription factor 208 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02434 Lapu-Chr9 38782519 38784765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02434 29 288 C2C2-Gata Transcription Factor Family AT4G36240 43.446 5.84e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu9g02434 GATA 9.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02434 - - gmx:100780311 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02434 9 38782519 38784765 Lapu9g02434 9 38782519 38784765 ECH
Lapu9g02434 9 38782519 38784765 Lapu11g00804 11 10864626 10866739 ECH