Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02430 ATGCAAAGGGAAACACAAGGCGAAGAAGAAGTAGTATCAAGGGGTTCTAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGTTGCAAGAACAAAGGGTTTCAGTGCCAAACCCATATCAAGAGTACTTGGACTCCTGTGGATAAGAGGCGCAACAAGGAGCAGCCACCCCCATCTCCACACAGCTTTCACGGAGATATTCCTCAAAAGCACGACCAGATCACTCCATATTCAGGTTTAGAGATGAAATTTCCTGGAACCACGAATTCAATGGCTATGTTTCGGTGCGTTCAGGTTCGGTCTATGGATGACGCGGTCAATGAAGTAGCGTATCAAACATCTGTGAACATTGGGGGGCATGTATTTAGTGGAATTCTGTATGATCAAGGCCCTGAACAAAGCTATAATAATAAGGGTGAGAGTTCCACTGGCCTTGCTGATGAACACCAGAATAATCATCTTGGTCTTATGAATAATGCCTCAATCCACAGTAGAGACAGTAGTGGTGTAACTATAGCCTCTGCTGGTCACGGTGACCCTCTTTTTCCTCCACCACCATATCCGTTTCCCCTTGCTTCCTTCAGACCCGGTATGCCATATTTCACATACCCAAGATCTTAA 648 0.4552 MQRETQGEEEVVSRGSKCQDCGNQAKKECSYSRCRTCCKNKGFQCQTHIKSTWTPVDKRRNKEQPPPSPHSFHGDIPQKHDQITPYSGLEMKFPGTTNSMAMFRCVQVRSMDDAVNEVAYQTSVNIGGHVFSGILYDQGPEQSYNNKGESSTGLADEHQNNHLGLMNNASIHSRDSSGVTIASAGHGDPLFPPPPYPFPLASFRPGMPYFTYPRS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02430 215 MobiDBLite consensus disorder prediction 56 79 - -
Lapu9g02430 215 MobiDBLite consensus disorder prediction 1 15 - -
Lapu9g02430 215 NCBIfam LRP1 C-terminal domain 92 140 IPR006511 -
Lapu9g02430 215 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 10 173 IPR007818 GO:0003700|GO:0006355
Lapu9g02430 215 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Lapu9g02430 215 MobiDBLite consensus disorder prediction 1 28 - -
Lapu9g02430 215 Pfam Domain of unknown function (DUF702) 15 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02430 Lapu-Chr9 38737370 38738451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02430 18 215 C2H2 Transcription Factor Family AT3G51060 39.207 2.53e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu9g02430 DUF702 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02430 - - pvu:PHAVU_009G004300g 396.356