Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02428 ATGGCTAAACCGAAGGCTCCAAGGCGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAGACCATTAGAGCTGGCGATTGTGTGCTCATGCGGCCGTCGGATCCGGCAAAACCATCATATGTGGCCAGGATTGAGCGGATCGAGGCGGATGCCCGTGGCGCAAACGTGAAGATTCATGTGCGGTGGTACTACCGGCCAGAGGAGTCAATCGGCGGTCGCCGCCAGTTTCATGGCTCGAAGGAGGTTTTCCTTTCCGATCACTTTGATGTTCAGAGCGCAGACACAATTGAAGGCAAGTGTACGGTCCACAGCTTCAAGAGCTACACAAAACTGGATGCCGTTGGGAATGATGACTTCTTCTGTCGGTTTGAGTACAATTCCTCTACCGGTGCCTTCAATCCTGATAGAGTTGCTGTGTATTGTAAATGTGAGATGCCTTACAACCCTGACGACCTAATGGTCCAATGCGAGGGCTGCAGTGATTGGTTCCATCCTGCTTGCATAGACATGACTGTTGAAGAAGCCAAAAGACTTGACCACTTCTTTTGTGAAGGCTGCTCTGCCGAAGGTCAAAAAAAGTTGCAGAACTCTCATTCTGCCTCTAGACACTCAGATACAAAGGTGGACACTAAACGCCGTCGTAGGTAA 651 0.4992 MAKPKAPRRTLESYSVKHISKTIRAGDCVLMRPSDPAKPSYVARIERIEADARGANVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAKRLDHFFCEGCSAEGQKKLQNSHSASRHSDTKVDTKRRRR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02428 216 Gene3D - 2 135 IPR043151 -
Lapu9g02428 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Lapu9g02428 216 FunFam Chromatin remodeling protein EBS 1 133 - -
Lapu9g02428 216 SUPERFAMILY FYVE/PHD zinc finger 130 193 IPR011011 -
Lapu9g02428 216 Pfam PHD-finger 141 189 IPR019787 -
Lapu9g02428 216 MobiDBLite consensus disorder prediction 194 216 - -
Lapu9g02428 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 203 IPR013083 -
Lapu9g02428 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lapu9g02428 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lapu9g02428 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lapu9g02428 216 FunFam Bromo-adjacent homology (BAH) domain-containing protein 134 204 - -
Lapu9g02428 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lapu9g02428 216 SMART PHD_3 141 188 IPR001965 -
Lapu9g02428 216 PANTHER OS08G0421900 PROTEIN 5 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02428 Lapu-Chr9 38716852 38722721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02428 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 1.07e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu9g02428 BAH 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02428 K25868 - gmx:100787968 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02428 9 38716852 38722721 Lapu9g02428 9 38716852 38722721 ECH