Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02425 ATGGCAACTTACTACCCAAGTTCAAGTAATCAAAGGGGTGCAGTGCCTATGGTGTGTCTTAGGGAGCCTTTGCACAATTCGTATCCTGAGACACCAATTTTGCCTAGCAATATGACATTGTATATGAACTCTGGTTCCTATTCCCAAGCGTTGCCCGGAAATTCTCAGCAGCAAAGCAATTACTTTGTGATTCCATCACAGTCAGTAGGTGCTTCAAATTCCACAGCTGAGCAGCAAGAAATACTGGCTAATATTGGTGGATACCAAAGTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAACCTATGGATGGACAGAACTTGCAAGGTCAGGGATTATCTCTAAGCCTTGGAACCCACATGCCCTCAGTAATTCAAATGCCTTCTGTCCGTGATAGGCATCATTGCTCAAATTTTGATTCGTTTTTGGGTACTAATCCATCACTTTTAGCCAATGAGGTCTACCAGAATGGCTCGTCTAGGGATGCGGGTACGAGACATTCTGAAAACTTTCCTACTGGGTTACCTGAAGCTAGTCATGATTTGAACAAAGCAGATTTTTCATTTCATGGAATTTCTAGTGTTGGAAGAACAGTTCCAAGCTCCAAATATCTCAAGGCAGTGCAACAACTGCTTGATGAAGTTGTTGATATCCGACAAGCTATTAAAAGACCTGAAACGAGAAGTCACGGAACACATGAGAACTCTAAGAAGAATTCTAAGGAGGGTGATGAGAAACTGGAAAATGAACGGCCTTCTGCAAATATTGTGCCTTCTCAAGCCTCATCCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACAAGAAGTTAGCAAAGCTTCTGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATACTACCAGAAGATGCAGAATGTGGTGTCATCATTTGATGTTGTAGCAGGATGTGGGGCAGCTAAACCATACACAGCCCTTGCTCTACAAACCATTTCATGCCATTTCCGGTGTTTGCGTGATGCAATTACTGGTCAAATTCATGCAACGCAAAAGAGCCTTGGGGAGCATGATGCTTCTGGAAGTAATAAGGGAGTTGGAATGGCAAGACTAAAGTATGTTGACCAACAAGTCCGACAACAGAGGGCTCTTCAGCAGCTGGGTATGATGCAGCATGCATGGAGACCGCAAAGGGGGCTTCCCGGAAGCTCTGTTTCAGTTCTACGTTCATGGCTTTTTGAGCATTTCCTTCATCCATATCCCAAGGATTCCGAAAAGACCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAGCCTATGATTGAGGATATGTACAAGCAAGATGTTTCTGATGCGGACATGGACTCAAGTTCTTCATCTGAAAATGTCTCCAAGGCAGCAAAAAGGGATGTCAATGATGATTCACAGCATTGTCAGAGTCCAATAGTAACTGATACAAATCATAGCGGTGGACAAGCTGAGGACCTTGGACATGCTCAGGTTCTTGATACAAAAATCATGGCATCCACTGGATTAAGTAGTCTCATTAGTGGAGGTCTTGAGGCTGAAACTGAACATGGGTCAGAAAAGCAGGCTGGGGAGAAAAGGCCAAATTTGGATAATTGTGGTCTCTTCTCTGATAACATGGTTGTTCAGTCTGATGGAGCTGCTAGTGATAGATTTGTGGCAGTTGGTCCAACAGGCAAAAAGTTTGAGAGGTTCAAGTTAGGAAGTGGAGTGTCTCTAACATTGGGTTTGCAGCATTGTGAAGGAGGTCATTTTTTGCCTGGTGAGACCCATCTCAATTTGGTTTCCATGAGGGAGAATGGCATCTACAGCAGCGCAGCTGCAGCTTCTACAGTTGGAGTACAGAGAGCAGAACTGGAGTGCGTTGGTGCTGGAAACCAGCGACAAAGGTTCAGTTCACCTCATATGTTGCATGATTTTGTGGTATGA 2010 0.4418 MATYYPSSSNQRGAVPMVCLREPLHNSYPETPILPSNMTLYMNSGSYSQALPGNSQQQSNYFVIPSQSVGASNSTAEQQEILANIGGYQSGVHDFSAWREGRSEMLVRQPMDGQNLQGQGLSLSLGTHMPSVIQMPSVRDRHHCSNFDSFLGTNPSLLANEVYQNGSSRDAGTRHSENFPTGLPEASHDLNKADFSFHGISSVGRTVPSSKYLKAVQQLLDEVVDIRQAIKRPETRSHGTHENSKKNSKEGDEKLENERPSANIVPSQASSSCELSHAEKQDLHKKLAKLLSMLDEVDSRYKQYYQKMQNVVSSFDVVAGCGAAKPYTALALQTISCHFRCLRDAITGQIHATQKSLGEHDASGSNKGVGMARLKYVDQQVRQQRALQQLGMMQHAWRPQRGLPGSSVSVLRSWLFEHFLHPYPKDSEKTMLARQTGLTRSQVSNWFINARVRLWKPMIEDMYKQDVSDADMDSSSSSENVSKAAKRDVNDDSQHCQSPIVTDTNHSGGQAEDLGHAQVLDTKIMASTGLSSLISGGLEAETEHGSEKQAGEKRPNLDNCGLFSDNMVVQSDGAASDRFVAVGPTGKKFERFKLGSGVSLTLGLQHCEGGHFLPGETHLNLVSMRENGIYSSAAAASTVGVQRAELECVGAGNQRQRFSSPHMLHDFVV* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02425 669 SMART prehox3 201 348 IPR006563 -
Lapu9g02425 669 SMART HOX_1 397 461 IPR001356 GO:0003677
Lapu9g02425 669 MobiDBLite consensus disorder prediction 166 187 - -
Lapu9g02425 669 MobiDBLite consensus disorder prediction 537 557 - -
Lapu9g02425 669 MobiDBLite consensus disorder prediction 230 259 - -
Lapu9g02425 669 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Lapu9g02425 669 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
Lapu9g02425 669 MobiDBLite consensus disorder prediction 230 277 - -
Lapu9g02425 669 MobiDBLite consensus disorder prediction 469 483 - -
Lapu9g02425 669 SUPERFAMILY Homeodomain-like 399 463 IPR009057 -
Lapu9g02425 669 CDD homeodomain 397 458 IPR001356 GO:0003677
Lapu9g02425 669 Pfam Associated with HOX 207 347 IPR006563 -
Lapu9g02425 669 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 482 - -
Lapu9g02425 669 MobiDBLite consensus disorder prediction 261 276 - -
Lapu9g02425 669 MobiDBLite consensus disorder prediction 494 511 - -
Lapu9g02425 669 Gene3D - 393 471 - -
Lapu9g02425 669 MobiDBLite consensus disorder prediction 467 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02425 Lapu-Chr9 38691572 38696102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02425 161 481 Homeobox Transcription Factor Family AT2G16400 55.589 4.33e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu9g02425 POX 2.5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02425 - - vra:111240485 1091.26