Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02404 ATGTTGCACTGTGCAAACACGTCGGGGAATCTGGCTGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAAGAGCAAGGTTACTTTTCTGGCTTCAACGCTCTTTTCTCTTCTTCTTCTCTTCATCTTCAAGATTCCTTGATGGTGGCTGCTGATTCCGGCTGTGCGCTCGGTGAAGTGGTGGCTCAGGCTCAGGCTCGCTCAATCAATAAGCCATCTGTTCCTGGGTTTGATGCAAGTTCTTCCATTTCAAGGACATTTAGTTGTCCACCTGCTTTGGTGGAGCCCGAGCCCAGGCCCACTGACTCCTCAATTGGGAAAGAGAGTTTCAAGAAAAGGAAACCTGACAAGCTTCACAATGCTAAGTTTGTTACAGAAAATGATATGAAAGACAAGAGGATCAAAGTGGGTGCGGAGGATGAACAATCCAAAATCACAGGGAGCCCCAAGAGTAACACCAACATTGATTGCAACAAAAGAGAAACTTGTGCAGATACTTCAATTTCAAAGCGAAATTCCAAAGCCTCCGATGTTCAAAATCAAAAGCCTGATTACATTCACGTCCGAGCGCGTCGTGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCTGGTTGCAACAAAATCACGGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAATCTCTTCAGCGACAGGTTGAGTTTCTCTCAATGAAATTAGCTGCTGTGAACCCACGGCTTGACTTGAGTATTGATGATCTATTTGAAAAAGAGGCGTTTCCTGCTTGTGCTGCGAATTTTCCAAACATTGGAATGTCATCAGATATGACTAACTCTGCCTATCTTCAATTTAATTCACCACAACAAATGGTTTCGTATGGAGGATTAGACACGGGGATCAACCCTTCCTATATGGGCCTAAAAAGGACTATAAGTGCCCATGCATCAATGCCTGAAACATATCTTCACTCCTCCTGTTTCACACAAATGCTGCCCTCCTCAACATGGGAAGGTGATTTCCAAAACCTTTGCAATTTGGATTTTGATCAAGTGCGAGCCACATCTTTCCCTTCTCATCTGTCCTCAGGACTGGTTGAAGCTGGCAATCATCTAAAGATGGAGATGTAG 1188 0.4436 MLHCANTSGNLAGDMTVLERQRARMKWQEEQGYFSGFNALFSSSSLHLQDSLMVAADSGCALGEVVAQAQARSINKPSVPGFDASSSISRTFSCPPALVEPEPRPTDSSIGKESFKKRKPDKLHNAKFVTENDMKDKRIKVGAEDEQSKITGSPKSNTNIDCNKRETCADTSISKRNSKASDVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDLSIDDLFEKEAFPACAANFPNIGMSSDMTNSAYLQFNSPQQMVSYGGLDTGINPSYMGLKRTISAHASMPETYLHSSCFTQMLPSSTWEGDFQNLCNLDFDQVRATSFPSHLSSGLVEAGNHLKMEM* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02404 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 249 IPR011598 GO:0046983
Lapu9g02404 395 SMART finulus 205 255 IPR011598 GO:0046983
Lapu9g02404 395 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 112 305 IPR024097 GO:0006355
Lapu9g02404 395 MobiDBLite consensus disorder prediction 142 162 - -
Lapu9g02404 395 Gene3D - 196 270 IPR036638 GO:0046983
Lapu9g02404 395 Pfam Helix-loop-helix DNA-binding domain 203 250 IPR011598 GO:0046983
Lapu9g02404 395 CDD bHLH_AtBPE_like 189 274 - -
Lapu9g02404 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 267 IPR036638 GO:0046983
Lapu9g02404 395 MobiDBLite consensus disorder prediction 94 119 - -
Lapu9g02404 395 FunFam Basic helix-loop-helix transcription factor 196 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02404 Lapu-Chr9 38563266 38565903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02404 14 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.860 9.63e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu9g02404 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02404 - - gmx:100798855 599.742