Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02402 ATGGCTTCTGCAGAAATTGAGTTCCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACAGCGATGCCCTTGAGAAAGCCTTCTCACAGTATGGCCAGATCATCGAATCGAAGGTCATCAACGACCGCGAAACTGGAAGATCAAGGGGGTTTGGATTTGTGACCTTCTCCACGGAGCAGGCGATGAGAGACGCTATCGATGGAATGAACGGCCAGAACCTCGACGGCCGTAACATCACCGTCAACGAGGCTCAATCCCGTGGACGAGGTGGTGGTGGTGGCGGTTACGGAGGCGGTGGTGGTGGATACGGTGGCGGTGGAGGAGGGTATGGCCGAGGTGGAGGAGGTGGTGGTTACGGTGGAGGTGGCCGCCGTGAAGGTGGTTATAACCGTAATGGTGGTGGTGGTGGAGGTTATGGTGGCGGTGGTGGTGGATACGGAGGTGGCGGTGGTGGTTATGGAGGTGGTAGAGACCGTGGATATGGCGATGGTGGGTCCCGCTACTCGAGAGGAGGTGGTGCTTCGGATGGTGGAAGCTGGAGGAATTAG 549 0.5792 MASAEIEFRCFVGGLAWATDSDALEKAFSQYGQIIESKVINDRETGRSRGFGFVTFSTEQAMRDAIDGMNGQNLDGRNITVNEAQSRGRGGGGGGYGGGGGGYGGGGGGYGRGGGGGGYGGGGRREGGYNRNGGGGGGYGGGGGGYGGGGGGYGGGRDRGYGDGGSRYSRGGGASDGGSWRN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02402 182 SMART rrm1_1 9 82 IPR000504 GO:0003723
Lapu9g02402 182 Gene3D - 2 104 IPR012677 -
Lapu9g02402 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Lapu9g02402 182 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Lapu9g02402 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Lapu9g02402 182 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 9 171 - -
Lapu9g02402 182 MobiDBLite consensus disorder prediction 148 182 - -
Lapu9g02402 182 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02402 Lapu-Chr9 38544206 38546311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02402 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 2.62e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02402 - K13195 gmx:100777821 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02402 9 38544206 38546311 Lapu9g02402 9 38544206 38546311 ECH