Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02398 ATGGCTTCTGATTCCAATTCCGATTCCCCATCGCCACCTCCACCCGATTCATCTTCCTCCCAATCTCCACCTCCATCACAGGACAATTCATCACCCCCACCTCCATCTTCACAGGACAATTCATCTCCTCCCCCACCATCTCAGGACAATTCTTCTCCTCCACCGCCATCTCAGGACAATTCATCTCCTCCCCCACCATCTCCACCGCCGCCACCACCTCCTGATAAGGATTCAGGAGGCCGCCGGTCACCGCCGCCCCCACATTCCGGCCGGGAGTTTTCTCCTCCTCCACCACCTTCAAAGAACCGGTTGTCTCCACCCAAGTCATCATCTTCGAGCTCATCAGGAGACAGTGGAAGCCATTCATTGAGCACGCCACTTATAATAGTAATTGCAGCCGGAGCTGGGATTTTTCTCCTTCTTCTTCTCATATCTATCGTTGCTTGTTCAAAAAGAAAGAAGAGATCTCAGTCTTCCATTGATTACTACGGTAATCAACCTAATGATGGGTTTTACAAAAATGAGTATGGGTACAACAACAACAAGGCTGAGCACGTTATGAATATTCCTCCACCACCTCCGGGAGCAGCTTGGACAGCACCACAGCATATCAGTACTGACATGAGCACTTCCAGTTTCTCTGGGTACCAAGGTCCCGTTTTGCCACCTCCACACCCCACAGTTGCTCTCGGATTCAACCAAAGCTCATTCACTTACGACGAGCTCTCAGCTGCCACTGCTGGCTTTAGCCAACGCAACCTGCTGGGCCAGGGTGGCTTCGGATACGTCCACAAAGGTGTTCTACCCAATGGCAAGGAAATTGCAGTGAAGAGCCTGAAATCCACTGGGGGCCAAGGAGACAGAGAATTCCAAGCTGAGGTTGATATCATCAGTCGTGTCCATCATCGCCATCTGGTCTCACTCGTTGGCTATTGCATGTCAGAAAGCAAAAAGCTCCTCGTTTATGAGTTTGTGCCTAACAAGACCTTTGAATACCACCTTCATGGAAAGGGTCGACCTGTGATGGATTGGGATACCAGGCTAAAAATTGCAATTGGATCGGCCAAAGGACTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTCGATGCCAAAGTGGCAGATTTTGGGTTGGCAAAGTTTAATCAAGACACTAACACTCATGTTTCTACTCGTGTAATGGGAACATTCGGGTATTTGGCTCCAGAGTATGCATCAACCGGTAAGCTAACTGACAAATCTGATGTGTTCTCCTTCGGTATTATGCTTTTGGAGCTCATAACAGGTCGGCCCCCAGTGGACAACACTGGGGAATTGGAAGATAGTTTGGCCGACTGGGCTAGACCACTTTGTACAAAGGCAATGGAAGATGGAAGTTTTGAAGGACTTGTGGATCCACGTTTAGGTGATAATTATGACAAGCAGCAAATGGCTTGTATGGTGGCTTGTGCTGCATTTAGCATAAGGCACTCAGCAAAGAAGCGCCCAAAAATGAGTCAGATTGTGAGAGTACTGGAGGGTGATGTGTCAGTAGAAGTGCTTGGTAACGAGGGAGTGAAACCTGGACAAAGTACAGTGTTCGGCGCAAGCGGGGAGTATGGTGCGGAGACATACGGTGCTGACATGATGAAGTTCAAGAAACTAGCATTAGACAGTGACAGTGAGTTTGGCGCAACCAGTGAATATGGCCTTAACCCTTCCATCTCAAGCAGTGAACAATCATCTGCTGAATTTGCAAATACGAGGAGGGTATAA 1803 0.482 MASDSNSDSPSPPPPDSSSSQSPPPSQDNSSPPPPSSQDNSSPPPPSQDNSSPPPPSQDNSSPPPPSPPPPPPPDKDSGGRRSPPPPHSGREFSPPPPPSKNRLSPPKSSSSSSSGDSGSHSLSTPLIIVIAAGAGIFLLLLLISIVACSKRKKRSQSSIDYYGNQPNDGFYKNEYGYNNNKAEHVMNIPPPPPGAAWTAPQHISTDMSTSSFSGYQGPVLPPPHPTVALGFNQSSFTYDELSAATAGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRHLVSLVGYCMSESKKLLVYEFVPNKTFEYHLHGKGRPVMDWDTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFDAKVADFGLAKFNQDTNTHVSTRVMGTFGYLAPEYASTGKLTDKSDVFSFGIMLLELITGRPPVDNTGELEDSLADWARPLCTKAMEDGSFEGLVDPRLGDNYDKQQMACMVACAAFSIRHSAKKRPKMSQIVRVLEGDVSVEVLGNEGVKPGQSTVFGASGEYGAETYGADMMKFKKLALDSDSEFGATSEYGLNPSISSSEQSSAEFANTRRV* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02398 600 Gene3D Phosphorylase Kinase; domain 1 226 324 - -
Lapu9g02398 600 Gene3D Transferase(Phosphotransferase) domain 1 325 530 - -
Lapu9g02398 600 MobiDBLite consensus disorder prediction 8 80 - -
Lapu9g02398 600 SUPERFAMILY Protein kinase-like (PK-like) 229 521 IPR011009 -
Lapu9g02398 600 ProSitePatterns Protein kinases ATP-binding region signature. 255 277 IPR017441 GO:0005524
Lapu9g02398 600 FunFam Proline-rich receptor-like protein kinase PERK1 325 532 - -
Lapu9g02398 600 Pfam Protein tyrosine and serine/threonine kinase 252 519 IPR001245 GO:0004672|GO:0006468
Lapu9g02398 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Lapu9g02398 600 FunFam proline-rich receptor-like protein kinase PERK1 227 324 - -
Lapu9g02398 600 MobiDBLite consensus disorder prediction 577 600 - -
Lapu9g02398 600 MobiDBLite consensus disorder prediction 1 122 - -
Lapu9g02398 600 MobiDBLite consensus disorder prediction 105 122 - -
Lapu9g02398 600 SMART serkin_6 249 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g02398 600 ProSiteProfiles Protein kinase domain profile. 249 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g02398 600 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 135 564 IPR047117 -
Lapu9g02398 600 MobiDBLite consensus disorder prediction 88 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02398 Lapu-Chr9 38482665 38485607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02398 98 594 Trihelix Transcription Factor Family AT1G70460 49.414 2.68e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu9g02398 PK_Tyr_Ser-Thr 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02398 - - gmx:100806299 786.949