Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02396 ATGTCTTCTTTGGATTTTTTACTCATGGAGCCAGCAGAAGTACCGGGGGTTAGTGGTGGAAAGTGGAGTGATCAGGAGACCCTCTTGCTCCTTGAAGCACTTGAACTTTATAAAGAAAATTGGAACGAAATTGCAGAACATGTTGCAACAAAATCAAAAGCTCAATGCATATTACACTTTGTTCAAATGCCAATCGAGGATATCTTTGTTGATTGTGGTGATGATGTTGATGCAAGTTTCAAAGAAAATATAGATCCAGCTACTTCTTGCAATGATTCATCTGTTCACAAAGATGCTTTAGAATTTGAGGAGAATAAGATTAGTGATGGCATTGAAGTCCATGTGCCGTCTCTACAAAACGAAACTACTAAGGCTGATGATGTGAATAATGTCAAAGTTGATGAGGAGACTCCAAAGCCAGACAATGTTGATGGCGAGAAAACCTGTGAGCAAATGACTAAATCAGAAGATGATTTTAAATTAAAATTTGGTCAGGAAGAAGGCAACAATTATGCTCAAAATGCCCTTGAGGAAACATTTACTCTGTTGGTTATTGTTGTGGACCTAAAGGGCCATCATCATTGGCTGAAGTTGGTAATCCTGTCATGGCACTGGCAGTTTTCCTTGGACGCATGGTGGATTCTGGTGTAG 651 0.3948 MSSLDFLLMEPAEVPGVSGGKWSDQETLLLLEALELYKENWNEIAEHVATKSKAQCILHFVQMPIEDIFVDCGDDVDASFKENIDPATSCNDSSVHKDALEFEENKISDGIEVHVPSLQNETTKADDVNNVKVDEETPKPDNVDGEKTCEQMTKSEDDFKLKFGQEEGNNYAQNALEETFTLLVIVVDLKGHHHWLKLVILSWHWQFSLDAWWILV* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02396 216 CDD SANT 38 63 IPR001005 -
Lapu9g02396 216 PANTHER SWI/SNF COMPLEX-RELATED 18 120 - -
Lapu9g02396 216 Gene3D - 17 68 - -
Lapu9g02396 216 FunFam SWI/SNF complex subunit SMARCC2 isoform C 18 68 - -
Lapu9g02396 216 ProSiteProfiles SANT domain profile. 17 68 IPR017884 -
Lapu9g02396 216 ProSiteProfiles Myb-like domain profile. 14 64 IPR001005 -
Lapu9g02396 216 SMART sant 18 66 IPR001005 -
Lapu9g02396 216 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Lapu9g02396 216 Pfam Myb-like DNA-binding domain 20 62 IPR001005 -
Lapu9g02396 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02396 Lapu-Chr9 38473856 38480710 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu9g02396 Myb_DNA-binding 4.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02396 K11649 - qsu:112035049 213.386