Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02387 ATGGAACCCGCGGGTGATTCCCATGGCACTGCTGATATGGAAGTTGTTGATGCGTCTTTGCATGGCCAGCCCGTGGCATCTTCCCCTACTCGCAATTCCCCTGCTCAGCTACAGCAGGATCAAGTAATGGTCGAACAGGGTGATGATAATAAAAACGGCGATCCTAGTAATGTGCCAGAGGCCAGTGTAATTAGCGAGAATCAGCTTGAGCTTGAAGATGCGAAGACCTTTTCACACCTTGAACTGATCACTCCAAAGCCTAAAGAAAAGAACATTAGAGAAATGAAGAATGTGCTAAATGATACTGAGATGACTGAGTATGATGAGTATGGCACACCTCTGGACCGAGAAACATTCATGAAAGAGCTTGAGAATTTCTACAGAGAGCGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCTGTTATCAGACTAGGTGGCTATGACGTGGTAACTGGATCCAAATTGTGGCGACAAGTAGGAGAGTCTTTCAACCCCCCAAAGACGTGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGACCGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTCCAAATGTGGAAAAAGAGGCTGCTGTTTACCAGGCTCCAGGCTCAGGTAGAGCACGAAGGGATGCAGCTGCTCGGGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGGTGAGGTTGCTGAGCCGGTTACTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGCATTGGTATTATTAATAAACAGAGGACGCCGGCTGGTTTGGAGCATGCTGAGAAAGCTGCAAATATTGAAGGAGATAGACAATTGGTCACAGCAGTGGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAAGATTGTTTCGAGGTGTACGCCCTAGTTCCTGGTCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTAGTTATAACTGGTCTACCAGAACACATTGATAATCCATGGGGAATTACCCCCTTCAAAAAGGTAGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCCGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCTTTTGAGCAGGGAGCTGTATGA 1242 0.4662 MEPAGDSHGTADMEVVDASLHGQPVASSPTRNSPAQLQQDQVMVEQGDDNKNGDPSNVPEASVISENQLELEDAKTFSHLELITPKPKEKNIREMKNVLNDTEMTEYDEYGTPLDRETFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHKRETGELQLPVGSFHQSPNVEKEAAVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVTKDKNFSSTPKREKNLKSIGIINKQRTPAGLEHAEKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02387 413 SMART bright_3 114 205 IPR001606 GO:0003677
Lapu9g02387 413 SMART ARID_2 110 200 - -
Lapu9g02387 413 MobiDBLite consensus disorder prediction 23 60 - -
Lapu9g02387 413 FunFam AT-rich interactive domain-containing protein 3 113 212 - -
Lapu9g02387 413 ProSiteProfiles ARID domain profile. 113 204 IPR001606 GO:0003677
Lapu9g02387 413 Gene3D - 311 412 IPR008978 -
Lapu9g02387 413 FunFam AT-rich interactive domain-containing protein 3 304 412 - -
Lapu9g02387 413 CDD ACD_sHsps_p23-like 328 407 - -
Lapu9g02387 413 Gene3D - 114 212 IPR036431 GO:0003677
Lapu9g02387 413 SUPERFAMILY ARID-like 101 211 IPR036431 GO:0003677
Lapu9g02387 413 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 312 413 IPR002068 -
Lapu9g02387 413 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 31 410 IPR045147 GO:0006357
Lapu9g02387 413 CDD ARID 115 200 - -
Lapu9g02387 413 Pfam ARID/BRIGHT DNA binding domain 116 200 IPR001606 GO:0003677
Lapu9g02387 413 MobiDBLite consensus disorder prediction 1 60 - -
Lapu9g02387 413 SUPERFAMILY HSP20-like chaperones 321 408 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02387 Lapu-Chr9 38387076 38396542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02387 84 410 ARID Transcription Factor Family AT1G76510 69.817 1.49e-158 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu9g02387 ARID 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02387 - - gmx:100777965 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02387 9 38387076 38396542 Lapu9g02387 9 38387076 38396542 ECH