Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02382 ATGAGCATGTCGGGATCTGACATGGCAACCAGGGAGCAATTCACTGTTGGGATGCACAACCCTCAATCCCAACCGCAACAACAACAACAACCTCAACTTCATCAAAACATGCGTATGGACTATGCTGCTGCTGCTGCTGATGGCGCTGTTTTCGCCGCCCCTACCATCAACATTAACGGCGGAGAATCCTCTCCAGTGGGTGTGCCTCCGGGCCTGGGCCAGGCCCATCCCCATCCCCAGGCCATGTTGGGTAACTCCAGTGAGACACTCAAGAGAAAGCGGGGAAGGCCCAGGAAATACGGGCCTGATGGTGGCATGGCCTTGAGCTTGAACACCAGCCCTCCTCCGGGTGGCTCCGCCGTGCCGGTTGGCCATTCCGGTGGGGCATTTCCGGCGGCTCCTCTCTCAGATTCTGCCTCAGCCGGTACCGGGAAGCGTAGGGGTAGACCTCGTGGTTCTGTGAACAAGAATAAGAAAAGCTCAAAGTTTTCTGGACCAGGAGCTTTCTTTACTCCGCATGTCATTACCGTGAAAGCTGGAGAGGATTTGTCAGCAAGAATAATGTCAATTTCCCAGAGTGGTTCAAGAAATGTCTGCATCTTAAGTGCAAATGGATCCATATCTAATGTGACACTTCGACAGCCTGCCTCGTCTGGTGGAACTGTGACTTATGAGGGACGATTTGAGATCTTATCACTTGGTGGTTCTTTGTTTCTTCCTGAAAATGGTTCACTCGGCGAAAGGGCTGGGGGGCTGAGTGTGTCCTTGTCAGGGCCAGATGGCCGTGTCTTGGGCGGCGGAGTAGCAGGTCTTTTGGTGGCTGCCTCCCCTGTTCAGATTGTTTTGGCTAGTTTTGTTTCCGATGGCAAGCAATCCAAGTCGGCAAAGCGGATACGAAATGTATCTGTCCCAGAAAAGGTTCCCACAGCAGGGGGCCAAAGCAGCTCACCATCAAGGGGCACTCTCAGTGAGTCTTCAGGCGGGGTTGGGAGTGGGAGCCCACTAAACCAAAGCACAGGAGACTGCATCAACAACATCAACAGCACCACCCCAACGCAAGGCTTTTCAGGCATGCCCTGGAAGTAA 1086 0.5359 MSMSGSDMATREQFTVGMHNPQSQPQQQQQPQLHQNMRMDYAAAAADGAVFAAPTININGGESSPVGVPPGLGQAHPHPQAMLGNSSETLKRKRGRPRKYGPDGGMALSLNTSPPPGGSAVPVGHSGGAFPAAPLSDSASAGTGKRRGRPRGSVNKNKKSSKFSGPGAFFTPHVITVKAGEDLSARIMSISQSGSRNVCILSANGSISNVTLRQPASSGGTVTYEGRFEILSLGGSLFLPENGSLGERAGGLSVSLSGPDGRVLGGGVAGLLVAASPVQIVLASFVSDGKQSKSAKRIRNVSVPEKVPTAGGQSSSPSRGTLSESSGGVGSGSPLNQSTGDCINNINSTTPTQGFSGMPWK* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02382 361 Gene3D - 172 301 - -
Lapu9g02382 361 MobiDBLite consensus disorder prediction 1 37 - -
Lapu9g02382 361 ProSiteProfiles PPC domain profile profile. 167 309 IPR005175 -
Lapu9g02382 361 MobiDBLite consensus disorder prediction 62 165 - -
Lapu9g02382 361 MobiDBLite consensus disorder prediction 1 36 - -
Lapu9g02382 361 CDD DUF296 171 285 IPR005175 -
Lapu9g02382 361 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Lapu9g02382 361 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Lapu9g02382 361 MobiDBLite consensus disorder prediction 294 361 - -
Lapu9g02382 361 MobiDBLite consensus disorder prediction 307 361 - -
Lapu9g02382 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
Lapu9g02382 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Lapu9g02382 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 345 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02382 Lapu-Chr9 38352525 38357174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02382 82 361 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 53.793 1.48e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02382 - - pvu:PHAVU_009G008300g 547.74