Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02376 ATGACTCGTCCCTTCAGATATTTAGGCGAGCGCAACTCGTCCAACGACTCTGCCGTTGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCACTCATCTGTGTCCTTGGCCTCGTTGCCGTCGCGCGCTGTGGCTGTCTCCGCCGCCTCCGCTTCTCCTCTGTCCCTACTCCCCAGCCTCCTCCCGCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACCGACGAATCCGCCGTTAAATTCGCCGATTGCGCGATCTGCCTCTCGGAGTTCGCCGCCGGGGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCACGTCAGCTGCATCGACGCCTGGCTCCGATCGCACTCATCGTGCCCGTCCTGCCGTCAGATTCTGGTGGTTTCTCGGTGCGACAAGTGCGGCGGGATCCCGGCTCCGTCGAGCTCTAGCTCCACGCCGCCTCCGCCGCCGGAATCCGAGGCCAGACTCAAGGTAAGGGAGGACAACGGCAATAGGTTCTTGCCTTAG 555 0.6324 MTRPFRYLGERNSSNDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRFSSVPTPQPPPAAANKGVKKKVLRSLPKLTATDESAVKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPSSSSSTPPPPPESEARLKVREDNGNRFLP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02376 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 150 - -
Lapu9g02376 184 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Lapu9g02376 184 Pfam Ring finger domain 95 138 IPR001841 -
Lapu9g02376 184 SUPERFAMILY RING/U-box 77 144 - -
Lapu9g02376 184 SMART ring_2 96 137 IPR001841 -
Lapu9g02376 184 CDD RING-H2_EL5-like 95 138 - -
Lapu9g02376 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 142 IPR013083 -
Lapu9g02376 184 MobiDBLite consensus disorder prediction 153 184 - -
Lapu9g02376 184 MobiDBLite consensus disorder prediction 169 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02376 Lapu-Chr9 38310613 38311535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02376 5 184 C3H Transcription Factor Family AT1G20823 63.918 2.02e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02376 - - pvu:PHAVU_009G007400g 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02376 9 38310613 38311535 Lapu9g02376 9 38310613 38311535 ECH