Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02365 ATGATGGCTACGAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGACAGCTTTCATTTTGAGAGGTTGCACATTGAGCCTCTTTATGATGCTTTTGTATGTCCGCTGACGAAGCAAGTTATGCGTGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAGTGTAGGGAGAGTGGACGGAGACTGGTTTGTCCTTTGACTCTTCAGGAGTTAAGAAGCACAGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGACATGGCTCGCCGGTCATTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAGTACATCTGCCAAAGAAGTCGATCAAACAAACATGCTGTCCGCAATGCAGGGCTTATTCCAATGATTGTTGACATGCTGAAGAGTAGCTCCCGTAAGGTTCGATGTAGAGCTCTGGAAACCCTTAGAGTCGTGGTAGAAGAAGATGATGAGAATAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACTGTAGTAAAATTCCTTTCGAACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTATGAACTCTCAAAGTCTGCTACCCTTTGTGAGAAGATTGGTTCAATCAACGGAGCCATTCTAATATTAGTAGGGATGACAAGCAGCAATTCAGAAGATCTTCTCACTGTTGATAAGGCTGAAAAAACATTGGAGAATCTAGAGACGTGTGAGGCTAATGTTCGGCAGATGGCTCAAAACGGTCGATTGCAGCCTCTTCTGAATCAACTTCTTGAAGGTCCACCAGAAACCAAACTATCCATGGCTGGATACCTTGGCGAGATGGTTTTAAACAATGATGTCAAAGTTATTGTTGCTAGAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCTGCACTGAGGGCACTAAATCAGATATCATCATGCGACCCAAGTGCAAAGATATTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCCACACGATTAAAAGAGATCTCTGCTACAATTCTAGCCAGTGTTGTAAACTCGGGAGAAGACTTCTATTCCATTCCATTTGGACCCGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCATCAATAGAATGCAAACTACTTCAAGTTCTTGTTGGACTCACTACTTCTCCAACTACAGTTCTGAGTGTTGTGGCTGCTATCAAAAGCTCTGGGGCCACCATCAGTCTAGTTCAGTTCATTGAAGCACCACAGAAAGATCTGCGTGTGGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAGCTGATGCACTACGTGGCTCAGTTGGACAGCTTGGAAGTCTAATTAAAGTCATATCAGAGAATACAGGGATCACTGAAGAGCAGGCAGCAGCTGCTGGCCTTTTAGCTGATCTACCTGAAAGGGACTTGGGCCTCACGAGACAGCTCCTAGATGAAGGTGCCTTTGTGATGATCATATCCAGGGTGATAGCCATCAGGCAGGGAGAGATCAGAGGCACTCGGTTCATGACACCATTTCTTGAAGGGCTTGTAAAGATTGTCGCAAGGGTTACATATGTCTTGGCTGAAGAGCCTGATGCCATTGCACTCTGCCGTGACCAGAACCTTGCTGCACTCTTTATTGACCTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCCATAGCTCTGGAGAATCTATCCCTAGAGTCAAAAAACTTAACCAAATTACCCGAGATGCCACCGCCAGGCTTTTGTGCTTCGGTGTTTTCATGCTTCAGCAAGCAGACAGTGATTAGTGGATTGTGTAGGCTGCACCGAGGGATGTGTTCTTTGAAAGAAACGTTTTGTCTCTACGAAGGGCAGGCGGTGCTTAAGTTGGTGGGTCTACTGGAGCACACAAATGTGAATGTGGTTGAGGCAGCACTGGCTGCTTTATCCACTTTAATAGATGATGGAGTAGACATTGAGCAAGGGGTGGCGATTTTGGTTGAAGCAGAGGGAGTGAAGCCTATGCTTGATGTGCTACTCGAGAAGAGAACAGAGACATTGAGGAGGAGAGCAGTTTGGGCAGTGGAGAGACTGTTGAGAACAGAGGACATAGCCGTTGAGGTTTCTGGGGACCAGAATTTGAGCACTGCACTTGTTGATGCTTTCCAGCATGGTGACTATCGAACTAGGCAGACAGCTGAGCGTGCTCTCAAGCATGTTGATAAGATACCAAACTTCTCAGGAATCTTTCCAAACATAGGATGA 2445 0.4507 MMATSWDGSNDPGSQSDDSFHFERLHIEPLYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECRESGRRLVCPLTLQELRSTELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQALKYVQYICQRSRSNKHAVRNAGLIPMIVDMLKSSSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSNELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSNSEDLLTVDKAEKTLENLETCEANVRQMAQNGRLQPLLNQLLEGPPETKLSMAGYLGEMVLNNDVKVIVARTVGSSLINIMKSGNMQSREAALRALNQISSCDPSAKILIEAGILSPLVNDLFAVGPNLLPTRLKEISATILASVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPSIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGITEEQAAAAGLLADLPERDLGLTRQLLDEGAFVMIISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDQNLAALFIDLLQSNGLDNVQMVSAIALENLSLESKNLTKLPEMPPPGFCASVFSCFSKQTVISGLCRLHRGMCSLKETFCLYEGQAVLKLVGLLEHTNVNVVEAALAALSTLIDDGVDIEQGVAILVEAEGVKPMLDVLLEKRTETLRRRAVWAVERLLRTEDIAVEVSGDQNLSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNIG* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02365 814 SUPERFAMILY RING/U-box 24 111 - -
Lapu9g02365 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Lapu9g02365 814 SUPERFAMILY ARM repeat 421 802 IPR016024 -
Lapu9g02365 814 SMART arm_5 140 180 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 348 393 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 267 307 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 591 632 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 182 222 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 308 347 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 673 714 IPR000225 GO:0005515
Lapu9g02365 814 SMART arm_5 718 760 IPR000225 GO:0005515
Lapu9g02365 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Lapu9g02365 814 Gene3D - 107 313 IPR011989 -
Lapu9g02365 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Lapu9g02365 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 106 IPR013083 -
Lapu9g02365 814 Coils Coil 257 277 - -
Lapu9g02365 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 810 - -
Lapu9g02365 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Lapu9g02365 814 SUPERFAMILY ARM repeat 121 445 IPR016024 -
Lapu9g02365 814 Gene3D - 574 804 IPR011989 -
Lapu9g02365 814 Gene3D - 314 487 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02365 Lapu-Chr9 38232258 38237447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02365 5 814 U-box Gene Family AT1G76390 65.640 0.0 1041
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02365 - - gmx:100789746 1459.89