Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02356 ATGATGAGAGATGGTGGTGTGACATCATCATCTGCTACCATGATGGAACCTCCACCACCTGATGGAACAACAACTTCAATGGACTTTGACTACATGGGTGAGCTTTTCTTAGATGGGTGCTGGTTGGAAGCCTCTGCTGATGGATCTGACTTCTTGCTGCAAAGTCCTTCCTTTTCCAATCCCCTCTTTGACCCTTCATTCTCCTGGCCTGCCTTGGAGACCAACCACAATAATGAATCCCAGGGTGCTGCTTTTGGGACACAACAAGAAGGCCACAACAACAACATGGTTAATGTTGTTGTTGCTTGTGGAGGTGGTGGTGGTGGTGGTCAGCAGTTTCAGCCAGAAACTATTTCAATTGAAGGAGCATCTGAAGGAGTCAGAAGTTGGAGGTTTGCACCCACACCTAGTCCTGCACCTGGACCTTCTATAATGGAGAAGTTGCTAAGGGCCCTCATGTGGATCAAAGACTACAATAGGAACAAAAATATGCTTATACAGATATGGGTGCCGGTTCAAAGAGGGGGTAGGCCAATTCTCGCAGCTAATGATATTCTGTTCTCACTCGATTCAAGGTCGGTGAACCTTGCAAAGTACCGCGAAATCTCTGTGGGTTATGAGTTTTCTGCTGAGGAGGGTGAGGTCAAGGAGTTGGTTCGAGCAGAGGAGGGTGACTCCAAGGAATTGTTGCCAGGATTGCCCGGTAGAGTGTTTAGGGACAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGACGAGTACCCGCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGGTCACTAGCAGTTCCAATCTTTGAGCAAGGGAGCAAGATGTGCTTGGGGGTTATTGAGGTTGTCATGACTACTCAGCAGAGCAACTATGGTCCTGAACTTGATAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCAAAACAATTAAATATTCAGAATGTGAAGCAGGCATGCAACAGGTCCTACGAAGCTGTACTACCTGAGATCCAACAGGTGTTGAGATCTGCATGTGAAATGCACAAGTTACCTTTAGCTCAAACTTGGATCCCATGTGTCCAACAAGGCAAAGAGGGGTGCCGGCACTCTGAAGATAATTATCTACTTTGTATATCTCCTGTGGATCAGGCTTGCTATGTTGGTGATCCCAAAATCAGGTCTTTTCATGAGTCTTGCACTGAGCATCATTTGTTGAAGGGTGAAGGTGTTGCTGGGGGAGCTTTTATGACCAACCAACCATGTTTCTCAGATGACATAACTTCCTTAAGCAAGAAAGACTATCCTCTGTCTCATCATGCGAGGTTGTTCGGATTGCGTGCTGCTGTTGCCATTCGCCTTCGAAGCATCTATAATAGCACAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAGATTGCAATGACAGTGAAGAGCAGAGAAAGATGCTTACTTCATTGTCCATCATTATACAAAGGGTTTGCCGCAGCTTGCGGGTTATAAGAGATAAGGAATTGGAGGAGCCTAACTTGTCAATTGATGAAGTGATATCCCTTGCAGATAGTGGATTTGATAGAACTGCAATTTGTGAGGAACTTCAACACAAAGGGACGGTTGCCTCATTGGATACTGAAGAAAGATTAAGGGAAACCACTGGTAGGAAGTTCTCTGACCCAAGGCAGCAGCAAGAAAGTCCTATTTTAAAGGGAAACCTTGACTGTGTCAGGGAGTGTTCTACTTCTGTTGAGGGTAACTTATCAAGCGTGGGAATAAGTAAAATGGGAGAGAGAAGACGGGCCAAAGCAGAGAAAACTATCACCTTGCAAGTTCTTAGACAATATTTTGCGGGAAGCCTAAAAGATGCTGCAAAGAATATCGGTGTGTGTACTACAACCTTGAAAAGGATCTGCCGGCAACACGGGATAAAGCGTTGGCCCTCCCGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTGATTGACTCGGTTCAAGGTGCCTCTGGTGCATTTCAAATCGATTCCTTCTATTCAAACTTCCCAGACCTAGCTTCTCCAAACCTATCAGGAACTACCCTGTTCTCAACTTTGAATCAAACTGATAATCCAAACTCAATAAGCACGCAGCCAGATCCTGGGGCATTGAGTCCAGAAGGCACATCAAAATCTCCTTCTTCGTCGGGCAGTCAGAGTTCCATTTCAAGCCATTCCTGCTCCAGCATGTCAGAGCTACAGCAGCATCACACAACTCACATTGCCGGTAACAAAGACACCACCACTGCTGGTGAAGATTCTGCTGATGTTGTGTTGAAGAGGATCAGAAGCGAAGCAGAGCTCAAAAACCTGAATCAGGATAAAGCAAAGCCCTTGCCAAGATCACTAAGCCAGGAAACACTTGGTGAACACCCGAAAAATCAGTATCAACAACGACCCTTGTTGAAAACAAATAGCAAGGTGGATGCTCACAGAGTAAAAGTCACGTATGGTGATGAGAAAACTCGGTTTCGGATGCCCAAAAGCTGGGGTTACAAAGGCCTTCTGCAGGAAATTGGTAGGAGATTTAATGTGAGTGACATGAGCATATTTGATGTCAAATACTTGGATGATGACTGTGAGTGGGTACTACTCACGTGTGATGCTGACTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGAGTGGTACCATCAAACTTTGCCTACAAACTTCAAGTCATAGTATGAGAAGTTCTTTAGAATTTAGATAA 2766 0.4497 MMRDGGVTSSSATMMEPPPPDGTTTSMDFDYMGELFLDGCWLEASADGSDFLLQSPSFSNPLFDPSFSWPALETNHNNESQGAAFGTQQEGHNNNMVNVVVACGGGGGGGQQFQPETISIEGASEGVRSWRFAPTPSPAPGPSIMEKLLRALMWIKDYNRNKNMLIQIWVPVQRGGRPILAANDILFSLDSRSVNLAKYREISVGYEFSAEEGEVKELVRAEEGDSKELLPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLAVPIFEQGSKMCLGVIEVVMTTQQSNYGPELDSVCKALEAVDLRSSKQLNIQNVKQACNRSYEAVLPEIQQVLRSACEMHKLPLAQTWIPCVQQGKEGCRHSEDNYLLCISPVDQACYVGDPKIRSFHESCTEHHLLKGEGVAGGAFMTNQPCFSDDITSLSKKDYPLSHHARLFGLRAAVAIRLRSIYNSTDDFVLEFFLPVDCNDSEEQRKMLTSLSIIIQRVCRSLRVIRDKELEEPNLSIDEVISLADSGFDRTAICEELQHKGTVASLDTEERLRETTGRKFSDPRQQQESPILKGNLDCVRECSTSVEGNLSSVGISKMGERRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSNFPDLASPNLSGTTLFSTLNQTDNPNSISTQPDPGALSPEGTSKSPSSSGSQSSISSHSCSSMSELQQHHTTHIAGNKDTTTAGEDSADVVLKRIRSEAELKNLNQDKAKPLPRSLSQETLGEHPKNQYQQRPLLKTNSKVDAHRVKVTYGDEKTRFRMPKSWGYKGLLQEIGRRFNVSDMSIFDVKYLDDDCEWVLLTCDADLEECIDVCQSSESGTIKLCLQTSSHSMRSSLEFR* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02356 921 Pfam RWP-RK domain 608 656 IPR003035 -
Lapu9g02356 921 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g02356 921 MobiDBLite consensus disorder prediction 786 813 - -
Lapu9g02356 921 MobiDBLite consensus disorder prediction 1 27 - -
Lapu9g02356 921 SMART PB1_new 827 910 IPR000270 GO:0005515
Lapu9g02356 921 SUPERFAMILY CAD & PB1 domains 827 912 - -
Lapu9g02356 921 Gene3D - 825 908 - -
Lapu9g02356 921 ProSiteProfiles RWP-RK domain profile. 595 676 IPR003035 -
Lapu9g02356 921 MobiDBLite consensus disorder prediction 700 769 - -
Lapu9g02356 921 Gene3D - 186 310 IPR029016 -
Lapu9g02356 921 PANTHER PROTEIN NLP8 119 916 IPR045012 GO:0003700
Lapu9g02356 921 Pfam PB1 domain 828 908 IPR000270 GO:0005515
Lapu9g02356 921 CDD PB1_NLP 828 908 IPR034891 -
Lapu9g02356 921 MobiDBLite consensus disorder prediction 700 768 - -
Lapu9g02356 921 ProSiteProfiles PB1 domain profile. 827 910 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02356 Lapu-Chr9 38112142 38117043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02356 27 912 NLP Transcription Factor Family AT1G20640 47.508 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lapu9g02356 PB1 1.2e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02356 - - gmx:100785135 1509.2