Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02335 ATGTCATCGGGGACGCCAACCCACCGCGGAGAGAACGGAAAACACTACCCTGCTCCACTTGCCCCACATGACCTCATCGTTAGGGACTCTTCTCTCTTCTGGGATACTCTCAGACGCTTTCACTTTCTTATGAGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAACTGGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTACGAGAAGGTAGTTGCAGAGAAGAAGTGGAGGGAAGTTGGTAGTGTTTTCAAGTTCTCAGCTACCACCACGAGTGCTTCTTTTGTATTGAGGAAACATTACTTCAGTCTTCTTTATCATTACGAGCAAGTTCACTTTTTTAAAGCTCGGGGTTCTGTCTACACTCCTTCAACAGATGCATTTTCTGGGAACAGCCCTTCTTGGAGACCTGAATTAGCTATTGTGGAATATTCGCCTAAGCCAGAAGATACTAGTCCCGAATCGCGTGCTGAAGAAACTTCATGTCTTTCAGGAGATGGAACCATAGATGGAAAATTTGACTGTGGTTATTTAGTGTCTGTGAAACTGGGTTCAGAGGTTCTTAGAGGAGTGCTTTACCATCCAGAAAAAATGGTTGCTCCTCCCTCTATTCCTCAACACGAGAATGCCATTGTGCCATTCAAAAACAAGGCTCATCGTTCTGGTCGTAGGAGGAAAAACAAACGAAGGTGGGACCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACAGTCTTAGCCCTGAAGAAAGAATGGTTTATCAGAACATCGGGTTAAGAGACAAAGAAAGGTACAAGAGAGAATTGACGGAGTACAAAGAGAAGATGAAGCTTAGGCAGACCCCAGAAGTTGGACTTCCATAG 969 0.4438 MSSGTPTHRGENGKHYPAPLAPHDLIVRDSSLFWDTLRRFHFLMSTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSATTTSASFVLRKHYFSLLYHYEQVHFFKARGSVYTPSTDAFSGNSPSWRPELAIVEYSPKPEDTSPESRAEETSCLSGDGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEKMVAPPSIPQHENAIVPFKNKAHRSGRRRKNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKRELTEYKEKMKLRQTPEVGLP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02335 322 CDD HMG-box_AtHMGB9-like 241 307 - -
Lapu9g02335 322 SMART hmgende2 240 309 IPR009071 -
Lapu9g02335 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 314 - -
Lapu9g02335 322 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Lapu9g02335 322 MobiDBLite consensus disorder prediction 222 241 - -
Lapu9g02335 322 MobiDBLite consensus disorder prediction 222 236 - -
Lapu9g02335 322 SUPERFAMILY ARID-like 28 126 IPR036431 GO:0003677
Lapu9g02335 322 SMART bright_3 28 119 IPR001606 GO:0003677
Lapu9g02335 322 Gene3D - 26 125 IPR036431 GO:0003677
Lapu9g02335 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Lapu9g02335 322 Pfam ARID/BRIGHT DNA binding domain 31 114 IPR001606 GO:0003677
Lapu9g02335 322 Coils Coil 321 322 - -
Lapu9g02335 322 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Lapu9g02335 322 SMART ARID_2 24 114 - -
Lapu9g02335 322 SUPERFAMILY HMG-box 238 311 IPR036910 -
Lapu9g02335 322 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Lapu9g02335 322 Gene3D High mobility group box domain 225 319 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02335 Lapu-Chr9 37903759 37905790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02335 14 315 ARID Transcription Factor Family AT1G76110 65.161 1.06e-135 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lapu9g02335 ARID 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02335 - - gmx:100784746 593.193