Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02290 TCTCCGTTGATGTCGACTTCCGGCCAAGATCATCATCAACCCCCTCCTCATCCCCCTCCTCATCCCTCTCAATTCAAATTCCACCTATTGCACTCCCCCTCCCACTACTCTCCCCTTCCCCATTCTCTTTTTCCCAATTTCCCCTTGAGTCAAAGATATGAAAGCAATAATTTCAAGTCTCACACAGGTAACATCGAAGTAGCTCCTGACATGAGCAAAGCAGTTAATCTTCCCCCTCCTGTTCAAACCGAGCCTACTATAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCAAGAAACACAAAATCTGGGACTCAAAGACCTAGTTTCGATTCCCCTAATTCAACTATGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTAACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAAGGATGGCACCCTGGATCTTAATAAAACGGCTGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGTGTAGGATTGATAGAGAAAACTTCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGGGAACTGGAAGACCAAGTTAACAGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAAGAAAGTGAAAGCTCTCAAAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCGAAAGCTAGTTTTATCGAGGTTCCTGATCCTGATGAGGAACTAGTTTTCCGGCAAAGGCAGTACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAATGACGACTGCAAGTTTGAGGATGATAGTGCCAAACGGGTGAAATTAATTGATCCATCATGGAATAGTGAGCACTACAGAAAGAGGGGTGTGGGATTATTTGAAAGCCAAGATGATAGAAATAATACTTCTGAGAGTTTCAATTTGCAGGGATCACAGGCATCTGGAATTCAAGAAATAACTCCCATTGATTTTGAAGTAAGTATAACTTGA 1122 0.4082 SPLMSTSGQDHHQPPPHPPPHPSQFKFHLLHSPSHYSPLPHSLFPNFPLSQRYESNNFKSHTGNIEVAPDMSKAVNLPPPVQTEPTIRGKQNGKSKLSRNTKSGTQRPSFDSPNSTMVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELEDQVNSLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEELVFRQRQYKMIVRSATGPIYLYLLSNDDCKFEDDSAKRVKLIDPSWNSEHYRKRGVGLFESQDDRNNTSESFNLQGSQASGIQEITPIDFEVSIT* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02290 373 MobiDBLite consensus disorder prediction 1 32 - -
Lapu9g02290 373 SUPERFAMILY E2F-DP heterodimerization region 198 305 IPR037241 -
Lapu9g02290 373 Gene3D - 194 305 - -
Lapu9g02290 373 PANTHER TRANSCRIPTION FACTOR E2F 72 313 IPR015633 GO:0000978|GO:0006357
Lapu9g02290 373 SUPERFAMILY "Winged helix" DNA-binding domain 122 185 IPR036390 -
Lapu9g02290 373 Gene3D - 117 189 IPR036388 -
Lapu9g02290 373 CDD E2F_DD 198 305 IPR032198 GO:0046983
Lapu9g02290 373 MobiDBLite consensus disorder prediction 85 117 - -
Lapu9g02290 373 Pfam E2F/DP family winged-helix DNA-binding domain 124 187 IPR003316 GO:0005667|GO:0006355
Lapu9g02290 373 Pfam E2F transcription factor CC-MB domain 203 302 IPR032198 GO:0046983
Lapu9g02290 373 FunFam E2F transcription factor 1 116 189 - -
Lapu9g02290 373 SMART E2F_TDP_2 122 187 IPR003316 GO:0005667|GO:0006355
Lapu9g02290 373 MobiDBLite consensus disorder prediction 71 117 - -
Lapu9g02290 373 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02290 Lapu-Chr9 37507647 37511398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02290 5 315 E2F-DP Transcription Factor Family AT1G47870 45.892 2.80e-86 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lapu9g02290 E2F_CC-MB 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02290 K06620 - gmx:100811650 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02290 9 37507647 37511398 Lapu9g02290 9 37507647 37511398 ECH