Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02273 ATGGCAACAACGGTTATATTTTGCAGCCTCAAACTGGTGGCTTTCTTCGCCATCTTAACCATAATCATAACCGCAACCGCAGCCCAAAACACCACTGCGTTAGAGATTCAAGCCTTAACCGCATTCAAGCGCAACCTCCATGACCCTCTGGGTTCCCTCGACGGTTGGGACCCTTCCACGCCCTCCGCACCATGCGACTGGCGCGGCATTCTCTGCCACAACAACCGAGTTCACCACCTCCGTCTTCCCCGTCTCCATCTCGCCGGTCAAATCCATCCTTCCCTATCCAATCTCCTCCAACTCCGCAAACTCAGCCTCCACTCCAACAATCTCAACTCCTCCATCCCTCCCTCCCTCTCACAGTGCCTCTTCCTACGCGCTGTTTACCTCCACAACAACCGCCTCTCCGGCCACCTTCCTCCGCCGCTTCTCAACCTCACCAACCTCCAAATCCTCAACCTCGCTCGTAATCTCTTCACCGGCAAAATCCCCAGCTACCTCTCTGCCTCCCTCCGCTTCCTAGACCTGTCCGACAACGCCTTCTCCGGCGACATTCCGTCCAACTTCTCCTCTAGATATCAGCTCCAGCTCATCAACCTCTCTTACAACAGCTTCACCGGAGGAATACCTGCCTCCGTGGGAACGCTGCAGAATCTTCAGTATCTATGGTTGGACTCTAACCGCATTCACGGAACCCTACCTTCGGCTATTGCGAACTGTTCCTCTCTGGTGCACCTCACCGCAGAGGATAACGCTCTCACCGGACTTCTTCCTCTCACCCTGGGAACCATGCCGAAGCTTCAAGTGGTTTCGCTTTCGCGGAACCAGCTTTCCGGTTGGGTCCCCACCTCCGTGTTCTGCAACACGCACCTGCGTAGCGTGAAAGTGGGGTTCAATTCCTTCACGGGGTTTTCCGCGCCGCAAAGTGGGGAATGCGACAGCGTTTTGGAGGTTTTGGATGTAAAGGAGAATCGCATTGTTCACGCGCGGTTTCCCTCGTGGTTGACCCACGTGACGACGTCGTTGAAGGCTCTTGACCTTTCTGGAAACTTCTTTACCGGTTCTCTGCCGGTTGATATTGGGAACTTTTTAGCGTTAGAAGAGTTTAGAGTGGCGAATAATTTGTTATCCGGTGGAGTTCCGCCTAGCATTGTGAATTGTAGGTTGTTAAAGGTTTTTGATCTCGAGGGGAACCGTTTCTCTGGGTTAGTTCCTGAGTTTCTCGGGGAAATGAGGAACCTGAAGGAGTTGTCTCTTGCTGGTAATCTTTTCACCGGTTCGCTTCCTTCTAGTTTTGGAACGCTTTCTGCGCTCGAGACGCTTAATTTGAGTGACAATAAGTTGAGCGGTGTGGTGCCTGAGGAGATCATGAAACTGGAGAACGTGAGTGAATTGAATCTCAGTAATAACAAGTTTTCGGGTGAAATTTGGTCTAATATCGGGGACATGACGGGTTTGCGGGTTCTTAATTTGAGTCAGAGTGGGTTTTCGGGAAGGGTTCCTGCTTCGTTGGGGAAGTTAATGAGACTAACCGTGCTCGATTTGAGCAAGCAGAACCTCTCAGGTGAGTTGCCCCTTGAGGTTTTTGGTTTACCGAGTCTGCAAGTTGTAGCACTTCAAGAGAACCGTTTGAGTGGTAAAGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGGTATCTCAATCTCAGCTATAATGAATATGTTGGTGAGATTCCAATAACTTACGGCTTCCTTAGTTCTTTAACGATTCTCTGTCTGTCTCACAATGGTGTTACTGGTGAAATTCCTCCCGAGATTGGTGGTTGTTCGCAACTTGAAGTATTGCAGTTGCGGTCAAATTTTCTTGAGGGTAACATTCCGGGTGACATCTCTCGGCTCTCTCATTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAGATATCACAGTGTTCTGCCTTGAGTTCGCTCTTGTTGGATGGTAATCACCTCGCGGGTCACATTCCAGGTTCCTTGTCAAAACTGTCAAATTTGACCGTGTTGAACCTTTCTTCGAATCTTTTGAAAGGGGAAATTCCGGTTGAACTGTCAAGCATTTCAGGTTTGGAGTATTTAAACGTGTCTAGTAATAATCTTGAGGGTGAGATTCCACGCGTGCTTGGTGCCAGATTCAATGACCCTTCAGTGTTTGCAATGAACCAAGGTTTATGCGGAAAGCCCTTGCTGAGAGAATGTGCAAAGGTTAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATAGGCGTGGCAGTGGCTGGTTTATGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTCTTGAGGTGGCGGAAGAAGCTTAGAGAAGGGGTGACGGGTGAGAAGAAACGGAGCCCCTCAACAAGTGCAGGCAGTAGAGGGAGTGGGGAAAACGGAGGACCAAAGCTAGTGATGTTCAACAACAAGATCACGTACGCGGAGACATTGGAAGCAACGAGGAACTTCGATGAAGAGAACGTGTTAAGCAGGGGAAGATATGGGCTCGTGTTCAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCCATTCGTCGCTTCGTTGATGGGTTCTTAGACGAGGCTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAGCATCGAAATTTAACAGTTCTGCGTGGTTACTATGCAGGCCCACCCGATGTGAGACTGCTTGTGTATGACTACATGCCCAATGGAAACCTTGGCACACTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTGAATTGGCCAATGCGTCACCTCATTGCACTGGGAATTGCTCGAGGGCTAGCTTTCTTGCACTCGGTGCCGATAGTCCATGGTGACGTGAAGCCTCAAAATGTTCTTTTTGATGCCGATTTTGAAGCCCATTTGTCTGAATTTGGATTGGAGCGGTTGACAGTAGCAGCAGCCGCAGAAGCATCGTCGTCGTCGAATCCAGTGGGGTCCTTAGGGTATGTTGCACCAGAAGCTGTATCGAGTGGGGTGGCTACAAAGGAGGGTGATGTTTATAGCTTTGGGATAGTGTTGTTGGAGATACTAACGGGAAAGAAACCGGTGATGTTCACGGAAGATGAGGACATAGTGAAATGGGTGAAGAAGCAGTTACAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTGGGTCTCCTATGCACAGCAACGGATCCTCTTGATCGACCATCTATGTCTGACGTTGCCTTCATGCTCCAAGGTTGCCGGGTCGGACCGGAAATCCCATCATCAGCTGATCCCACAACACTACCTTCTCCTGCTTGA 3393 0.4963 MATTVIFCSLKLVAFFAILTIIITATAAQNTTALEIQALTAFKRNLHDPLGSLDGWDPSTPSAPCDWRGILCHNNRVHHLRLPRLHLAGQIHPSLSNLLQLRKLSLHSNNLNSSIPPSLSQCLFLRAVYLHNNRLSGHLPPPLLNLTNLQILNLARNLFTGKIPSYLSASLRFLDLSDNAFSGDIPSNFSSRYQLQLINLSYNSFTGGIPASVGTLQNLQYLWLDSNRIHGTLPSAIANCSSLVHLTAEDNALTGLLPLTLGTMPKLQVVSLSRNQLSGWVPTSVFCNTHLRSVKVGFNSFTGFSAPQSGECDSVLEVLDVKENRIVHARFPSWLTHVTTSLKALDLSGNFFTGSLPVDIGNFLALEEFRVANNLLSGGVPPSIVNCRLLKVFDLEGNRFSGLVPEFLGEMRNLKELSLAGNLFTGSLPSSFGTLSALETLNLSDNKLSGVVPEEIMKLENVSELNLSNNKFSGEIWSNIGDMTGLRVLNLSQSGFSGRVPASLGKLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGKVPEGFSSIVSLRYLNLSYNEYVGEIPITYGFLSSLTILCLSHNGVTGEIPPEIGGCSQLEVLQLRSNFLEGNIPGDISRLSHLKELNLGHNRLKGDIPDEISQCSALSSLLLDGNHLAGHIPGSLSKLSNLTVLNLSSNLLKGEIPVELSSISGLEYLNVSSNNLEGEIPRVLGARFNDPSVFAMNQGLCGKPLLRECAKVRRRKKRRLIMLIGVAVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEANFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAAAAEASSSSNPVGSLGYVAPEAVSSGVATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02273 1130 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Lapu9g02273 1130 Gene3D Ribonuclease Inhibitor 314 460 IPR032675 -
Lapu9g02273 1130 FunFam Uncharacterized protein 264 477 - -
Lapu9g02273 1130 Gene3D Ribonuclease Inhibitor 461 754 IPR032675 -
Lapu9g02273 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 801 911 - -
Lapu9g02273 1130 FunFam Inactive leucine-rich repeat receptor-like protein kinase 480 748 - -
Lapu9g02273 1130 SMART LRR_sd22_2 579 605 - -
Lapu9g02273 1130 SMART LRR_sd22_2 675 704 - -
Lapu9g02273 1130 SMART LRR_sd22_2 216 242 - -
Lapu9g02273 1130 SMART LRR_sd22_2 627 650 - -
Lapu9g02273 1130 SMART LRR_sd22_2 435 464 - -
Lapu9g02273 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Lapu9g02273 1130 MobiDBLite consensus disorder prediction 793 816 - -
Lapu9g02273 1130 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Lapu9g02273 1130 Pfam Leucine rich repeat 605 664 IPR001611 GO:0005515
Lapu9g02273 1130 Pfam Leucine rich repeat 412 472 IPR001611 GO:0005515
Lapu9g02273 1130 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Lapu9g02273 1130 Pfam Leucine rich repeat 509 566 IPR001611 GO:0005515
Lapu9g02273 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 191 - -
Lapu9g02273 1130 SUPERFAMILY L domain-like 56 302 - -
Lapu9g02273 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 65 162 - -
Lapu9g02273 1130 ProSiteProfiles Leucine-rich repeat profile. 437 458 IPR001611 GO:0005515
Lapu9g02273 1130 Gene3D Ribonuclease Inhibitor 191 304 IPR032675 -
Lapu9g02273 1130 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Lapu9g02273 1130 Gene3D Phosphorylase Kinase; domain 1 811 911 - -
Lapu9g02273 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g02273 1130 SUPERFAMILY L domain-like 531 717 - -
Lapu9g02273 1130 SUPERFAMILY L domain-like 335 590 - -
Lapu9g02273 1130 SMART LRR_typ_2 531 554 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 146 170 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 435 458 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 98 122 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 264 288 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 459 483 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 411 434 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 216 240 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 675 699 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 627 651 IPR003591 -
Lapu9g02273 1130 SMART LRR_typ_2 579 603 IPR003591 -
Lapu9g02273 1130 SMART serkin_6 836 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu9g02273 1130 SUPERFAMILY Protein kinase-like (PK-like) 815 1119 IPR011009 -
Lapu9g02273 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1116 - -
Lapu9g02273 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Lapu9g02273 1130 Pfam Protein tyrosine and serine/threonine kinase 839 1055 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02273 Lapu-Chr9 37309258 37312650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02273 9 1130 Receptor kinase-like Gene Family AT4G36180 62.445 0.0 1333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Lapu9g02273 PK_Tyr_Ser-Thr 7.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02273 - - gmx:100801571 1847.79