Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02267 ATGCAGCTCCCCCCACCTCCCCTTTCTATTTCTCTTTCCCTCATTAACTCATTATCCTATTCCTGTTCCTATTGTCACTCAGAATTCGCAGAAGCAGATAGAAAGAAACAGAAGCATAAGCATAAGCATAAGCATAAGGAAGCAGCAACAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCTAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACAGGCAAAGTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTCGATCAATACCAGATGACTCTAGGAGTTGATCTGTGGAACTCTCACTACGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGAGGTGAACAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGATCGATCTGAACATGGAAGATCTCAAGCTCCTCGAGGAAGAAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAACAACGAGAAAGAAGTGCACAACAGACTCTTGCGCGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGAGAATGGAGGAGAGTACGAGTCTGTGATCGGATTCTCAAATTTAGGTCCACGAATGTTTGCATTGAGCCTACAGCCAAGCCATCCTAGTGCTCACAGTGGACCAACCTCTGATCTCACCACTTACCCCTTACTTTTCTAG 834 0.452 MQLPPPPLSISLSLINSLSYSCSYCHSEFAEADRKKQKHKHKHKHKEAATAMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKVHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIENGGEYESVIGFSNLGPRMFALSLQPSHPSAHSGPTSDLTTYPLLF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02267 277 Coils Coil 128 162 - -
Lapu9g02267 277 CDD MADS_MEF2_like 53 131 IPR033896 GO:0000977|GO:0045944
Lapu9g02267 277 ProSitePatterns MADS-box domain signature. 54 108 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 Coils Coil 202 222 - -
Lapu9g02267 277 ProSiteProfiles K-box domain profile. 135 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu9g02267 277 ProSiteProfiles MADS-box domain profile. 52 112 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 Gene3D - 64 132 IPR036879 GO:0003677|GO:0046983
Lapu9g02267 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 108 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 PRINTS MADS domain signature 89 110 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 PRINTS MADS domain signature 74 89 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 PRINTS MADS domain signature 54 74 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 PANTHER SERUM RESPONSE FACTOR HOMOLOG 54 213 - -
Lapu9g02267 277 SMART madsneu2 52 111 IPR002100 GO:0003677|GO:0046983
Lapu9g02267 277 Pfam K-box region 133 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu9g02267 277 SUPERFAMILY SRF-like 54 146 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02267 Lapu-Chr9 37244784 37248963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02267 52 276 MADS-box Gene Family AT3G54340 54.545 2.91e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu9g02267 K-box 9.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02267 K09264 - gmx:547720 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02267 9 37244784 37248963 Lapu9g02267 9 37244784 37248963 ECH