Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02248 ATGAGGCATAATAATGCGTTTCCTGAGGGCTTGGGAGCATTTTCTAGCATTGGAGTGGCTGAGGGCTCTGAGATAAGCCACACAAGGCATTTTATGGATCTTCTAGGTGCAGCTAATGAGAGCAATCACCACCAACCTCAAGGACTTTCCCTCTCCTTAGGCTCTCATATGCTTATTCCTTCTGATGAATACAGGCATCATCAGAGACCCTTGAACCCGGGTCTCATCAACCCCAATTTCTTCATGTCTGGACAAGAGGCACGTGAGGCCTGTAATCCACCCGTGGAGCATCTTACCAGTGACTACTTTTTCAACACTGGCACTGGCACTTTTGTCTCTTCTTCTTCTGCCCCTTTGAACCGGTCTCCTAATTCCACACCTTATGCTCCTCCTGAGTCTTTTGCTTCTGTCATTGGGAACTCGAGGTACCTCAAACCGGTACAGTCCCTTCTTGAAGATCTTGTTGACGTTGGTGGAAATGTGGTGGATAGAATCAATGAAAAGTATGTTGAGAAGATGTTTCATGGGAGTAGAGGAGGTGCTAGGATACTTTCCTCAGAGTTGAAGGCAGAGTTGAGGAATAATGGATCTTTGTTGGCTGATAAACATGAACATCACATCAAAATTGCAAGGTTGATTTCTTTGTTGGATAAGGCTGAGGGCAGGTGTGAGAAATATTATCATCAAATGGAAGAAGTGGTGTCGTCCTTTGAAATGGTAGCAGGTTTGGGAGCTGCTAAGTGTTACACTGCTTTGGCACTCCAAGCCATGTCAAAGCATTTCTGCAGCTTGAGAGATGCCATATTGTCGCAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACGTTAGGCATAGTAGAATGTCTCTCCAACAACTTGGGGTGATTCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGTTCGTGGCTTTTTGAGCATTTTCTCCACCCTTACCCTAATGATTCTGAAAAGCTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGGGAATCTTCTGAAGACTCCAACCCGGCTGCTAACAACTGCTTGACAAGGGAAGATACCACAGATTGTGTAGAGGATTGA 1251 0.4428 MRHNNAFPEGLGAFSSIGVAEGSEISHTRHFMDLLGAANESNHHQPQGLSLSLGSHMLIPSDEYRHHQRPLNPGLINPNFFMSGQEAREACNPPVEHLTSDYFFNTGTGTFVSSSSAPLNRSPNSTPYAPPESFASVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYVEKMFHGSRGGARILSSELKAELRNNGSLLADKHEHHIKIARLISLLDKAEGRCEKYYHQMEEVVSSFEMVAGLGAAKCYTALALQAMSKHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDVRHSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAANNCLTREDTTDCVED* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02248 416 CDD homeodomain 320 381 IPR001356 GO:0003677
Lapu9g02248 416 Pfam Associated with HOX 137 268 IPR006563 -
Lapu9g02248 416 Gene3D - 315 395 - -
Lapu9g02248 416 SUPERFAMILY Homeodomain-like 326 387 IPR009057 -
Lapu9g02248 416 ProSiteProfiles 'Homeobox' domain profile. 339 380 IPR001356 GO:0003677
Lapu9g02248 416 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 397 - -
Lapu9g02248 416 SMART prehox3 132 270 IPR006563 -
Lapu9g02248 416 MobiDBLite consensus disorder prediction 389 416 - -
Lapu9g02248 416 Pfam Homeobox KN domain 337 376 IPR008422 GO:0003677|GO:0006355
Lapu9g02248 416 SMART HOX_1 320 384 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02248 Lapu-Chr9 37072145 37075442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02248 114 399 Homeobox Transcription Factor Family AT2G16400 47.279 8.96e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu9g02248 POX 4.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02248 - - gmx:100792161 715.301