Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02208 ATGACGGAACCTCAGAACCCTTCATCTTTCACACAATCCCCGGTGTCGGAAATCGCTGCACAACCTCAACCTCAACCTCTGCTACCTCCCAAAAAGAAACGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACACTGCTGGCGACGAACCGTTTCGTTTGCGAGATCTGCAACAAAGGGTTCCAGCGCGATCAGAACCTGCAGCTTCACCGGCGCGGGCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGAGCAAGGAACCGCGGAAGAAAGCGTACGTGTGCCCCGAGCCTTCGTGCGTCCACCACAACCCCGCGAGGGCGCTGGGCGACCTAACTGGAATCAAGAAGCACTTCTGCAGAAAACACGGGGAGAAAAAGTGGAAATGCGAACGCTGCTCTAAGAAATACGCTGTACAGTCCGATTGGAAAGCTCATGCCAAAACTTGTGGCACCAGAGAGTACCGATGTGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGCGATGTGTTAGCGCAAGAGAGCGCCAGGACCCAGGTCCAGGACCAGGACCAGGCCCATGCCCATGCCCAAAATGTTAGCAGTAGCAACGTTGATGTGGCTTCTTCGCCACCTGCGCCTCCACTCACTCCCTCTGCGTCTGTGGTGTCTCCAACCTTGTCCATTCAGAGCTCAGAAATTCCAGAAAACCCAAGGAAGCTGTCACCGATGTCTCCAAACGCAACGTGCTTCGTGACAAGCAGCACCCCTTCCAGTTCCAGCACTTGCACCACTGTTTTTGCAAGTGTGTTGGCACCGTCCACCACAACGACTCGTTCACAATCTCAATCACCGTCACCGTCAACTTCCTCATTCTTCAACCTCATGTCAAACTTGGCTCGCTCGGATAACCCTAATGCCATCACTAATCTGAGAGAACCAACATCCCTCTCCCTCTCCTCACCGCTCTATCTCTCCAACAATAACCCTCCCCACTTCACAGCTTCTCCTCAACCTGCACTATCTGCCACTGCATTACTCCAAAAAGCAGCTCAAATGGGTGCATCCAATGCTTCCCTTCTTCGTGGCTTAGGCTTGGCAGCAGCAACGTCATCATCTTCATCATCCTTCGGGAAAGACGAGGGTTTCAACATCAATGCAGCCACACCAGCACAATGGAACGGGCAAGTAAAGCAAGAGAATCAGCCCGTGGTGGATAACCTTGGGCTTGGGCTTCCATGTGGGAGTGGGAGTGGGAATGTGACAGATGTGATGATGGGCCCTTCTACCCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTCGGTCTTGGCATCGGTGGCGGAGCAAGCAGGGGTGGTCTCTCCGCTTTGCTCACCTCTTTCGGAGGGAACTTTGATCCACCCGGTAATGGCGGAGTTCACCGGTAG 1458 0.5398 MTEPQNPSSFTQSPVSEIAAQPQPQPLLPPKKKRSLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPRKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHAKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARTQVQDQDQAHAHAQNVSSSNVDVASSPPAPPLTPSASVVSPTLSIQSSEIPENPRKLSPMSPNATCFVTSSTPSSSSTCTTVFASVLAPSTTTTRSQSQSPSPSTSSFFNLMSNLARSDNPNAITNLREPTSLSLSSPLYLSNNNPPHFTASPQPALSATALLQKAAQMGASNASLLRGLGLAAATSSSSSSFGKDEGFNINAATPAQWNGQVKQENQPVVDNLGLGLPCGSGSGNVTDVMMGPSTPFVGQPMTRDLLGLGIGGGASRGGLSALLTSFGGNFDPPGNGGVHR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02208 485 MobiDBLite consensus disorder prediction 1 20 - -
Lapu9g02208 485 MobiDBLite consensus disorder prediction 195 254 - -
Lapu9g02208 485 MobiDBLite consensus disorder prediction 195 219 - -
Lapu9g02208 485 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Lapu9g02208 485 FunFam protein indeterminate-domain 12-like 39 107 - -
Lapu9g02208 485 MobiDBLite consensus disorder prediction 1 44 - -
Lapu9g02208 485 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Lapu9g02208 485 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lapu9g02208 485 Gene3D Classic Zinc Finger 40 107 - -
Lapu9g02208 485 Pfam Zinc-finger of C2H2 type 60 82 - -
Lapu9g02208 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 453 IPR031140 -
Lapu9g02208 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lapu9g02208 485 Gene3D Classic Zinc Finger 114 195 - -
Lapu9g02208 485 SMART c2h2final6 60 82 IPR013087 -
Lapu9g02208 485 SMART c2h2final6 136 156 IPR013087 -
Lapu9g02208 485 SMART c2h2final6 101 131 IPR013087 -
Lapu9g02208 485 MobiDBLite consensus disorder prediction 283 302 - -
Lapu9g02208 485 MobiDBLite consensus disorder prediction 229 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02208 Lapu-Chr9 36794438 36797768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02208 31 470 IDZ Gene Family AT5G66730 51.037 1.07e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu9g02208 zf-met 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02208 K25869 - gmx:100800089 667.922