Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02176 ATGGAAGCTTTCAACACAAGCTCCCCCACCACTTCTTCTTCTTCTGACTCTTCCTCTTCCGACTCCACCCACGCCAACCCCAACCATCCCCACAGAATCAAAGGCCCCTGGAGCGCCGAGGAGGATCGGATCCTCACCCGCCTCGTCGACCGATACGGGGCCCGCAACTGGTCCCTCATCAGCCGCTACATTAAGGGCAGGTCTGGCAAGTCCTGCCGCCTCCGCTGGTGCAACCAGCTCAGCCCCACCGTCCAGCACCGGCCCTTCTCGCCCCAAGAGGACGACACCATCATCGCCGCCCACGCCCAGTACGGTAACAGGTGGGCCACCATTGCTAGACTGCTACCGGGCCGAACCGATAACGCCGTTAAGAACCACTGGAACTCCACGCTCAAGCGCAGAGCCAAGGCTTTTCTTGACAGTAATAATGTTAGTGATGGCAACAACGAAGGAGCCACTTCTTCTGCTCCTTCTCGCTCCTTTCAGGATGACCCGTTGACCGCGTTGACTCTCGCTCCCCCCGGTGTCTCTAACGCCGCCGTGGCCGAGGACGCCGTTCTGGACCACCGGGCCTCGCCGGAGAGTGCGCCGGCGGGATTTTGGGATATGATGAGAGATGTGATCGCGAGGGAAGTGAGGGAATATGTGTCTTCCAATCTTTCTGATAACTCGGGGTTTCATTAA 684 0.5892 MEAFNTSSPTTSSSSDSSSSDSTHANPNHPHRIKGPWSAEEDRILTRLVDRYGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVQHRPFSPQEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAKAFLDSNNVSDGNNEGATSSAPSRSFQDDPLTALTLAPPGVSNAAVAEDAVLDHRASPESAPAGFWDMMRDVIAREVREYVSSNLSDNSGFH* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02176 227 MobiDBLite consensus disorder prediction 1 37 - -
Lapu9g02176 227 FunFam MYB transcription factor 34 85 - -
Lapu9g02176 227 SMART sant 33 82 IPR001005 -
Lapu9g02176 227 SMART sant 85 133 IPR001005 -
Lapu9g02176 227 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Lapu9g02176 227 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Lapu9g02176 227 MobiDBLite consensus disorder prediction 140 168 - -
Lapu9g02176 227 MobiDBLite consensus disorder prediction 1 26 - -
Lapu9g02176 227 Gene3D - 87 156 - -
Lapu9g02176 227 CDD SANT 88 131 IPR001005 -
Lapu9g02176 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Lapu9g02176 227 MobiDBLite consensus disorder prediction 141 165 - -
Lapu9g02176 227 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Lapu9g02176 227 PANTHER MYB PROTEIN-RELATED 34 156 - -
Lapu9g02176 227 CDD SANT 36 78 IPR001005 -
Lapu9g02176 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Lapu9g02176 227 Pfam Myb-like DNA-binding domain 37 95 - -
Lapu9g02176 227 Gene3D - 33 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02176 Lapu-Chr9 36500260 36501081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02176 32 146 MYB Transcription Factor Family AT3G50060 69.565 4.78e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu9g02176 Myb_DNA-bind_6 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02176 - - vra:106761536 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02176 9 36500260 36501081 Lapu9g02176 9 36500260 36501081 ECH