Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02144 ATGCAAGGGCAGAGAGGTACAGTTGGTTCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCACCTGGTGATATGAACTCACCTTATGTGAATTCTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCCAGCAATACCCCAAATGAAATTAACAATAATGAACAAAAACGAGAACTTGGATGGACATCAACCATTACTGCTGGTGCATTGCCTGGTGCAAGACTGGAAGAAAGGCGCCCTGAACCAACCAATACTCTTTCTCTAGACAACGATAATACAAGTCCTATGTACATGCGCAGTCCCGAATCTCGTTTGATGTCCCAGAATCTCAACCTAAATGCAGGTTTAGCGGACAGTGGCAGTGATAATAGTCAACATCTGGACCTCCCAAACTTACACATGTCTAGTGGGTCAGCAAATGAGTGCTTACCATCTAATGTTGGATCTGGTTCCTTTTTGCTTCCTTCAGCAACTAATGGGTTCCTGGTAGAAGGTTCTGATGGTCGGCCAGGTTCTCTTGATACTCGACGTGTCTCTTGTAAAAGAAAGGCAGTTGAAGGAATTAATGGACAATCTTCAGATAGTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTAGTGCTTGGCATGCGATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAACAGAACTGTTTCCTCAGAGCAGGTAAATGCTAGACTTGGCCTGGGCATGGGGGATGAAGCATCTGAAAATGTTCCTGATTCAAACATTTCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGGTTGAGGTTAAATCCTTCGAATCAACAAAATTCTGTTCCTCCCACTGCATTCTCAACTGGCAGCATGATTAGGCAGTCCGTTGTTTCTTCATCCTCTCAAACATCACAAAGGTTTCATTCTGTTGATAATTCTCTGAACCTGAGATCAGCTCCACCTATAGACAACGTGGTTCCTCAAAGTCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAATCGATTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATTCATCAAACCCAGTTGTATGTGCAGACAGAGACCAAGAAGATGCAAGCTCAAGAAGAATGTCTAGAAATATCTTAGAACATCCTGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCTACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAGGTATGCCAGCAAATGTCGCTTCTTCATCAAGGACTGGATCTAATCCAGCTACCAACACCTCATCTGCCTCAAATTGGGTTTCTCGTCCTAATCCTCCACAACATCCACGGAGGCTATCTGAATATGTCCGCCGGTCCTTGTTTTCTCCTGGTTCTGATGCTATTGGAAATCCAAGCAATGCTTACTCTTCCTTGCGCTCTGGTCTTTCTACATCTGAACCAAGGGTGATATCATCTGGGACTGCGGCAAATCCGAGATCATCTCCATGGATGGAGAGGCAAGGAGACAGTGAATTTGGAATTCCTTATTCACTACGCACTCTTGCTGTTGCAAGTGAAGGAAGTAGCAGACTAGTATCCGAGCTCCGCAATGTTTTGGGCCTTATGCGTAGAGGTGGGAATGTGCGATTTGAGGATGTTGTGATCCTTGATCATCAATCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGATATGCGACTTGACGTTGATAACATGTCTTACGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCGTATTGAAACTCTTGAAACAGAAAAAGCACTCGGTTGAAAAAGAATCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACGCTTGATTGCGGCCACGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCAACATGA 2121 0.4319 MQGQRGTVGSMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGDMNSPYVNSINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWTSTITAGALPGARLEERRPEPTNTLSLDNDNTSPMYMRSPESRLMSQNLNLNAGLADSGSDNSQHLDLPNLHMSSGSANECLPSNVGSGSFLLPSATNGFLVEGSDGRPGSLDTRRVSCKRKAVEGINGQSSDSGSSSYNQHADGSAWHAIPTQDNAGSSSNRTVSSEQVNARLGLGMGDEASENVPDSNISGSSESFHRNFRLRLNPSNQQNSVPPTAFSTGSMIRQSVVSSSSQTSQRFHSVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSIRWNGGSSSRNIHSSNPVVCADRDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLGMPANVASSSRTGSNPATNTSSASNWVSRPNPPQHPRRLSEYVRRSLFSPGSDAIGNPSNAYSSLRSGLSTSEPRVISSGTAANPRSSPWMERQGDSEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLLKQKKHSVEKESQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02144 706 MobiDBLite consensus disorder prediction 433 475 - -
Lapu9g02144 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Lapu9g02144 706 SMART ring_2 659 699 IPR001841 -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 73 131 - -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 222 241 - -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 494 536 - -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 379 407 - -
Lapu9g02144 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 212 704 IPR045191 GO:0061630
Lapu9g02144 706 MobiDBLite consensus disorder prediction 496 535 - -
Lapu9g02144 706 Pfam Ring finger domain 659 700 IPR001841 -
Lapu9g02144 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 220 241 - -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 433 481 - -
Lapu9g02144 706 FunFam E3 ubiquitin-protein ligase MBR2 627 704 - -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 73 98 - -
Lapu9g02144 706 MobiDBLite consensus disorder prediction 379 394 - -
Lapu9g02144 706 SUPERFAMILY RING/U-box 645 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02144 Lapu-Chr9 36197936 36206049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02144 1 706 C3H Transcription Factor Family AT2G15530 32.800 3.29e-76 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02144 - - gmx:100783014 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02144 9 36197936 36206049 Lapu9g02144 9 36197936 36206049 ECH