Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02136 ATGGCGCAAGTTCCTGACAAATATAGCAGTGGAGGATCCACGTACCGCAGTTCCTACATGTCATTGTATGTGGGGGATCTTGACCAGAGTGTCAGCGAAGACCAGCTCTATGATTTCTTCAATGAGGTTGGACAAGTCGTTTCCGTTAGAATTTGCAGGGACTATCTCACTCAGAAGTCCCTTGGTTACGGCTACGTCAATTTCAGTGCCGCTCACCATGCCGAAAAAGCAATAGAGGTGCTAAATTTCACTCATTTGAATGAGAAACCCGTTAGAATAATGTACTCTATTCGGGACCCCAGTGCTCGTAGGAGTGGTACTGCTAACGTGTTTATAAAGAATTTGGATAAGTCAATCGATCAGAAGAGTCTTTCCGATGTCTTTGCGGCTTTTGGAAATATTCTATCTTGCAAGATTGCGATGGAAGCTTCTGGCGAGTCTAAGGGCTATGGTTTTGTGCAGTTTGAGGAGGAAGCATCTGCTAAAGAGGCGATTGAAAAGTTAAATGGCATGCTTCTCAATAATAAACAGGTTTATGTGGGTCCTTTCCTGCGAAGGCAGGATAGAGATAATGTTCCCAGTGATACGAAGTTTAATAATGTTTTTGTAAAAAACCTGTCGAAGACAATAAAGGATGCTGACTTGCGGAGAATATTTGGAGAATATGGAGTTATTACTAGTGCTATAGTGATGAAAGATGTAAATGGTGAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAATGCAGACGATGCTGCTAAAGCTCGGGACGCTCTTGATGGAAAGACTTTTGATGATAGGAAGTGGTATGTTGGAAGAGCCCTGAAAAAATCGGAAAGGGAGCATGAACTGAAAGGGCGACATGACCAGAATAGGATTCCTTTCATTCCTAAGCAAGGTACAAACTTGTATATAAAGAACTTGAACGATAGTATTGGTGATGAAGAACTCAAGGAACTTTTCTCTGAGTTTGGTGCAATAACCTCATCCAAGATTATGAGAGATCCAAATGGAATAAGTAAAGGATCTGGGTTTGTCGCCTATACAAATGAGGAGGAAGCAAATCGGGCTCTTGCATTGATGAATGGTCGAATAATTGTTGGCAAACCTCTCTATGTTGCCCTTGCAGAGAAAAAGGAAGAGAGACAAGCAAGGTTACAGGCACACTTTTCAGGAATGAGGGCTTGTGCACCTTTTTTTCCACCTCGAATTCCAATGTTTTCTATGGGGCCTCCTGGGATAGGACCACCATTTTTGTATAGGCCAACTCCAGCCTTCATGCCTCAAGCTCCAGTTGGTTACCTGCAGCCTCCTGTTCCCGGAATGAGGCCAACTGGTCCTCCAATGCCAAGCTTCTATCCGCTGCCAAGAGGACAACGAGGAGGACCTCCTGTACACCCGCCAATGTTACACCAACAGATGCTTCCAAGGGGAAATTTCTATCGAGGTCCTCCTGGCTCCGATGTGCAAAATATTCATGAGGCAGGAGTATCAGGAGAAATGGTCCCTTTTTTTGCCCTTGGTCAGCCAGTGCCACTTCAGGCCCTGGCATCAGCCGTTGCCAATGCTACTCCTGAACACCAGAGGATTATGCTAGGTGAAGCTTTATTCCCATTAGTAGAAAAGCTGGAGCGTGATGCAGCAGCAAAGGTTACTGGTATGCTTTTAGAGATGGACCAACCTGAGGTGTTACATCTGATTGAGTCACCAGATGCTCTCGAGGCAAAAGTTGCTGAGGCCATGGATGTATTGAGACAAGTTGAACATGAACAATCAAACCTCACAGCTGATCATCTTGCTTCCCTCTCTCTGAATGAGGATCCACGGTCTTAG 1833 0.4446 MAQVPDKYSSGGSTYRSSYMSLYVGDLDQSVSEDQLYDFFNEVGQVVSVRICRDYLTQKSLGYGYVNFSAAHHAEKAIEVLNFTHLNEKPVRIMYSIRDPSARRSGTANVFIKNLDKSIDQKSLSDVFAAFGNILSCKIAMEASGESKGYGFVQFEEEASAKEAIEKLNGMLLNNKQVYVGPFLRRQDRDNVPSDTKFNNVFVKNLSKTIKDADLRRIFGEYGVITSAIVMKDVNGESKGFGFVNFANADDAAKARDALDGKTFDDRKWYVGRALKKSEREHELKGRHDQNRIPFIPKQGTNLYIKNLNDSIGDEELKELFSEFGAITSSKIMRDPNGISKGSGFVAYTNEEEANRALALMNGRIIVGKPLYVALAEKKEERQARLQAHFSGMRACAPFFPPRIPMFSMGPPGIGPPFLYRPTPAFMPQAPVGYLQPPVPGMRPTGPPMPSFYPLPRGQRGGPPVHPPMLHQQMLPRGNFYRGPPGSDVQNIHEAGVSGEMVPFFALGQPVPLQALASAVANATPEHQRIMLGEALFPLVEKLERDAAAKVTGMLLEMDQPEVLHLIESPDALEAKVAEAMDVLRQVEHEQSNLTADHLASLSLNEDPRS* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02136 610 SMART rrm2_1 302 374 IPR003954 GO:0003676
Lapu9g02136 610 SMART rrm2_1 109 181 IPR003954 GO:0003676
Lapu9g02136 610 SMART rrm2_1 200 272 IPR003954 GO:0003676
Lapu9g02136 610 SMART rrm2_1 21 94 IPR003954 GO:0003676
Lapu9g02136 610 SMART rrm1_1 21 94 IPR000504 GO:0003723
Lapu9g02136 610 SMART rrm1_1 302 374 IPR000504 GO:0003723
Lapu9g02136 610 SMART rrm1_1 109 181 IPR000504 GO:0003723
Lapu9g02136 610 SMART rrm1_1 200 272 IPR000504 GO:0003723
Lapu9g02136 610 SUPERFAMILY PABC (PABP) domain 466 596 IPR036053 GO:0003723
Lapu9g02136 610 Gene3D - 508 590 - -
Lapu9g02136 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 98 IPR000504 GO:0003723
Lapu9g02136 610 FunFam Polyadenylate-binding protein 190 284 - -
Lapu9g02136 610 Gene3D - 291 393 IPR012677 -
Lapu9g02136 610 Gene3D - 184 290 IPR012677 -
Lapu9g02136 610 SMART poly_2 524 587 IPR002004 GO:0003723
Lapu9g02136 610 CDD RRM2_I_PABPs 106 182 IPR045305 -
Lapu9g02136 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
Lapu9g02136 610 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 21 585 IPR006515 GO:0003723
Lapu9g02136 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 180 IPR000504 GO:0003723
Lapu9g02136 610 Gene3D - 13 108 IPR012677 -
Lapu9g02136 610 SUPERFAMILY RNA-binding domain, RBD 20 188 IPR035979 GO:0003676
Lapu9g02136 610 CDD RRM4_I_PABPs 300 378 - -
Lapu9g02136 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 371 IPR000504 GO:0003723
Lapu9g02136 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 91 IPR000504 GO:0003723
Lapu9g02136 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Lapu9g02136 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Lapu9g02136 610 Gene3D - 109 181 IPR012677 -
Lapu9g02136 610 FunFam Polyadenylate-binding protein 508 590 - -
Lapu9g02136 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 378 IPR000504 GO:0003723
Lapu9g02136 610 FunFam Polyadenylate-binding protein 102 189 - -
Lapu9g02136 610 PANTHER RNA BINDING PROTEIN 17 82 - -
Lapu9g02136 610 SUPERFAMILY RNA-binding domain, RBD 199 382 IPR035979 GO:0003676
Lapu9g02136 610 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 512 589 IPR002004 GO:0003723
Lapu9g02136 610 FunFam Poly(A) binding protein cytoplasmic 1 like 295 382 - -
Lapu9g02136 610 Pfam Poly-adenylate binding protein, unique domain 520 584 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02136 Lapu-Chr9 36106032 36109044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02136 9 605 Eukaryotic Initiation Factors Gene Family AT4G34110 56.311 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02136 K13126 - gmx:100799386 744.577