Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02111 ATGGGGAGAGTGAAGCTTCAGATCAAGAAGATTGAGAACACAACAAATAGGCAAGTGACTTTCTCGAAGAGGAGGAATGGACTCCTCAAGAAAGCTTACGAGCTTTCTGTTCTTTGTGACGTTGATGTGGCTCTCATCATGTTTTCCCCTTCTGGAAGAGTCAGTTACTTCTCTGGCAACAAAAGAATTGATTTTGCATCTTTTACCATTAAAGCGTGGCCTGCAGCAACCTTGGAACCTCTTCTCAACAAATGA 255 0.4275 MGRVKLQIKKIENTTNRQVTFSKRRNGLLKKAYELSVLCDVDVALIMFSPSGRVSYFSGNKRIDFASFTIKAWPAATLEPLLNK* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02111 84 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 59 - -
Lapu9g02111 84 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 69 - -
Lapu9g02111 84 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Lapu9g02111 84 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Lapu9g02111 84 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu9g02111 84 SUPERFAMILY SRF-like 2 67 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02111 Lapu-Chr9 35861754 35862751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02111 1 68 Type I MADS-box Gene Family AT1G22130 77.143 8.65e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu9g02111 SRF-TF 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02111 - - vvi:100253913 120.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02111 9 35861754 35862751 Lapu9g02111 9 35861754 35862751 ECH