Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02110 ATGGTTCTGTTACATCCACCCATGCGCACTATACCATCTCAGCCTCGCCGGTGGCAACGTGCTTGGATGCTGTCTCCTCTCACCATTTGGATTTGTGTTTCAGCCACACTCCATTATGGGTATTACGGGGATTCTCATATCCTGCTTGGTCCTGCCTCGTCCCGTTTGATTAGAACAAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCGAGCAAGGACAAAAATCAAGTCTTTCTTCAGGTCTTCAATGAGAAGCCTGAGTTAAGCTCCCAAACTAATTGGACCGCTTCGGATTTCTTCCTTCTTGAAGGGTATAAAAGCAAGGGGATTTCTTTGTGGTTAAATCAGGGCTCCACCATCCGTATTAGGTGGGAAGAACATACTACTAGTAGTTTGGATCAGCTACATGGGATCGTGATCAAAGGAGACATGAAGTTTGAACTACTACAGGCTCCACAAGCGAGCTTCCTTCATGCAATTTCTCTTCGAGAGACTGTTAATGGTAAAGAAGCTGAATACATGGTTGAGGAAGATGATAAATACCACATTGGGGTTCTAAACAAGAATGCCAGGAACATAATCTTGAGTATGGAAGTTAATGTTTCAGCAAGGGTATATGATACCACAAAAGTCAAGAAGATGTGCTCCACTGAAAATGGATTTTGTAGGCTCAGTTTTTTCTTCCCTAATACTCATTATGTTATTCTTACGGCAACCAACAATGGAGATGGGGTATCGTATGTTGAAATTTCTTTAGTGGCCCGTGTTTTTGCCTACATAGTACTTCTAGGAGTTATTGTGATCGTTGTTTATCTGATTCTGAAAGTCCTTGGAGTTTATGATGATGCTGAGCAGCATAGTCATGTTACAATCGATGTCAGATACAGAACAAGTAATGTAGTTGCAACACAGACTGAAACTGAGTCCTTAATGCCAGTGGAGGGAAATCGAATGTCATATGGAACAAATGCAAAAGATGAAGAAGATTCAGGAGCATATAGTAGCTCTTCGGAGGAGTTATATGATGAAAAATTATGTTGCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTGTGCGACTTGCTATGACTGTGCACAGAGGATTGTCGATGGGGAGAGCAAAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTATTTCACATTTAG 1197 0.4144 MVLLHPPMRTIPSQPRRWQRAWMLSPLTIWICVSATLHYGYYGDSHILLGPASSRLIRTSSVFVKQLQVSSKDKNQVFLQVFNEKPELSSQTNWTASDFFLLEGYKSKGISLWLNQGSTIRIRWEEHTTSSLDQLHGIVIKGDMKFELLQAPQASFLHAISLRETVNGKEAEYMVEEDDKYHIGVLNKNARNIILSMEVNVSARVYDTTKVKKMCSTENGFCRLSFFFPNTHYVILTATNNGDGVSYVEISLVARVFAYIVLLGVIVIVVYLILKVLGVYDDAEQHSHVTIDVRYRTSNVVATQTETESLMPVEGNRMSYGTNAKDEEDSGAYSSSSEELYDEKLCCICYDEQRNSFFVPCGHCATCYDCAQRIVDGESKVCPICRRLIHKVRRLFHI* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02110 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 397 IPR013083 -
Lapu9g02110 398 SUPERFAMILY RING/U-box 336 392 - -
Lapu9g02110 398 PANTHER OS05G0521000 PROTEIN 25 396 - -
Lapu9g02110 398 Pfam Domain of unknown function (DUF4792) 79 146 IPR032008 -
Lapu9g02110 398 Pfam Zinc finger, C3HC4 type (RING finger) 343 392 - -
Lapu9g02110 398 Pfam Domain of unknown function (DUF4793) 171 272 IPR032010 -
Lapu9g02110 398 ProSiteProfiles Zinc finger RING-type profile. 346 386 IPR001841 -
Lapu9g02110 398 SMART ring_2 346 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02110 Lapu-Chr9 35853518 35856203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02110 205 392 C3H Transcription Factor Family AT3G06140 21.287 5.69e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02110 - - gmx:100794488 601.668