Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02074 ATGCCTCCGTACCAAGAAGAGCTGCTAGCAACAGAAGCAACGACCATGAAGGACGCTAATGGTGCTAACGTTTTGGATCTGAAAACGTTGATTGAGGAGCTTGAGTCATCGATTGAGGTCCCTTCCGTTTTTATCTGCCCAATCTCGCTGGAGCCAATGCAGGACCCCGTCACCATTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACGTGCCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACGCCCAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAGAAGTACTTGGCCATGAAGAAGAAGCTCCAGGACGTGCAAGGCACCGCCTTGGAGCTCTTGGACACGCTCAAAAGGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAACTCGTCGATTCCCATCTCTCCACGAGAAAAACCGTCGAGGAAAACAACGGGCTTGCCTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCAATTGGGATTCTTGTAAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCAACCCGCCAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACCAAGATGAATTGCGCCAAGTTGATTCAGATGTTGTTGGTGGAAGGTAACCCCTCCGAGACCGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTTTTAAGGTTAGTGAGAGATAAAAAACACCCAACAAGCGTTTTAACCGGACTCATATTACTCAAAATTGTTTGCTCGCGTGAATCGGTTAGAAGCACAATTGTAAGCATAGGAGCAGTGCCTCAGTTGATTCAGCTTTTGCCCACTTTGAACAACGAGTGTTTAGAGATAGCTCTTAATATTCTTGAAGTGTTGTCGACACTTCCTGAGGGAAGATTGGCTTTGAAAGAGTGTCCCAATATTATTCCCAGCGTGGTCAAGTTGTTGATGAGAGTCTCAGAAAGTTGCACACAATTAGCATTGTCCATTTTGTGGGCTATTTACAAGCTCGCCCCTGAAGAATGTGCTTCAAAAGCTGTTGAAGCAGGGTTGGCGGCGAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCGGTATTAAAGCAGAAATCTGCAGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGTATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1278 0.4703 MPPYQEELLATEATTMKDANGANVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTICTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNTTLHHFILSWFSQKYLAMKKKLQDVQGTALELLDTLKRVKGQNRVRALKQLRKLVDSHLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNNECLEIALNILEVLSTLPEGRLALKECPNIIPSVVKLLMRVSESCTQLALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02074 425 PANTHER WDSAM1 PROTEIN 37 411 IPR045185 GO:0061630
Lapu9g02074 425 SUPERFAMILY RING/U-box 37 110 - -
Lapu9g02074 425 SUPERFAMILY ARM repeat 118 405 IPR016024 -
Lapu9g02074 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 123 IPR013083 -
Lapu9g02074 425 CDD RING-Ubox_PUB 41 93 IPR045210 -
Lapu9g02074 425 Gene3D - 270 422 IPR011989 -
Lapu9g02074 425 Pfam U-box domain 40 110 IPR003613 GO:0004842|GO:0016567
Lapu9g02074 425 SMART Ubox_2 43 106 IPR003613 GO:0004842|GO:0016567
Lapu9g02074 425 ProSiteProfiles U-box domain profile. 39 113 IPR003613 GO:0004842|GO:0016567
Lapu9g02074 425 Gene3D - 125 269 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02074 Lapu-Chr9 35542867 35544144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02074 25 425 U-box Gene Family AT3G49810 63.591 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02074 - - gmx:100808281 726.857