Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02066 ATGAATTTGAAGATGGATTCCGATAGAGCAAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTTGCTAAGTACGGCGCTGTTTTGGACTCCACAATCTCCGTCGACCACAGCACCCGATGCCCTAGAGGTTTCGGCTTCGTCACTTTCTCTGACCTCTCTGCCGCTGAACAAGCCCTCCAAGACACGCATGTCATTCTAGGAAGAACGGTAGAAGTGAAGAAAGCAATTCCCAGAAGTGAACAACAGCAACACCAAAACCAGTTACACAATAGAGGGGGAGGTAACTATAATACTAGTTGCGACTGTAGCAGTGACACCAATGTTAGGACTAAAAAGATTTTTGTTGGGGGTTTACCTGCTGGTATATCCGAGGAGGAGTTTAAACAATACTTTGAGAGGTTTGGTCGGATAAATGACGTTGTTGTTATGCAGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATCACGTTTGATTCCGAGGAATCGGTTCAAAACGTTATGGTGAAGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCCAAAGAGGGAAACCATGGGTATGATAGTTTTAGTAAATTGAGAAATAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTGCTCCTTATAGTCCCAGGAACATGCTTCCGGGTTTTGCTCCTTCGCTGTGGTATAGTAGTGATGGAGTATATGCATATGGATCTAATGCTTACGGTTGCTGGTACCCCATGGGTGGGTATGGGGGGAACGGATATGCGATACCATCTGATGCTTCTAGGAACTTCTGGTACGGGCCAATGATGACTGGTCCTCAGGCATGTCAAGTGCCTTATGCTAGTGCTGTTCCGAACTTAGCTTATGTCGGGGGTAGGATTGGAATATTAGGTAGTGGGGTAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCAGGCAACACGACATTGCCTCATGGTGTAAACCAGAATGTTGTGGACTCTTCGAATTTGAAAGGAAGCAACGGTGAAATATCTAGCTGA 1113 0.4564 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGAVLDSTISVDHSTRCPRGFGFVTFSDLSAAEQALQDTHVILGRTVEVKKAIPRSEQQQHQNQLHNRGGGNYNTSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRINDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDSFSKLRNKSERGVPKSFAPYSPRNMLPGFAPSLWYSSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSDASRNFWYGPMMTGPQACQVPYASAVPNLAYVGGRIGILGSGVGSWGYGGILGSATNLKFDQPFIGNGFVPGNTTLPHGVNQNVVDSSNLKGSNGEISS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02066 370 FunFam RNA-binding protein 1 116 206 - -
Lapu9g02066 370 CDD RRM2_Hrp1p 121 198 - -
Lapu9g02066 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Lapu9g02066 370 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
Lapu9g02066 370 Gene3D - 2 97 IPR012677 -
Lapu9g02066 370 MobiDBLite consensus disorder prediction 88 105 - -
Lapu9g02066 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Lapu9g02066 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 188 IPR000504 GO:0003723
Lapu9g02066 370 MobiDBLite consensus disorder prediction 85 105 - -
Lapu9g02066 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Lapu9g02066 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 295 - -
Lapu9g02066 370 SUPERFAMILY RNA-binding domain, RBD 116 203 IPR035979 GO:0003676
Lapu9g02066 370 Gene3D - 116 205 IPR012677 -
Lapu9g02066 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Lapu9g02066 370 SMART rrm1_1 121 193 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02066 Lapu-Chr9 35454924 35459051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02066 12 258 Eukaryotic Initiation Factors Gene Family AT2G36660 23.282 2.18e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02066 K14411 - gmx:100816822 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02066 9 35454924 35459051 Lapu9g02066 9 35454924 35459051 ECH